Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O11
         (1257 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   5.9  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = -2

Query: 599 PXXPXGGGGXGXXPPPXXXXXFFFFXXXFXXPXKXXXXPPPPXGGGGGXXKNXXPKKFVV 420
           P  P GG   G  PPP               P      PPPP  G GG      P+K V+
Sbjct: 664 PPPPPGGQAGGAPPPPPPPLPGGAAPPP--PPPIGGGAPPPPPPGFGGFANLVKPRKGVI 721


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
 Frame = +1

Query: 457  PPPPPXGGGGXXXFXXGXXXXXXKKKXXXXXX--GGGXXPXPPPPXG 591
            PPPPP G         G                 GGG  P PPPP G
Sbjct: 933  PPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGG 979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,046
Number of Sequences: 59808
Number of extensions: 194119
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3940393390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)