Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O09
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 539 CLLPDLRNERPPPEVTAAPTSEPTSAGPVPLXRDLYF 429
           CL+  +  +   P   A P   P+S+GP     D  F
Sbjct: 326 CLVNIVLGDSDTPPKPAPPPPPPSSSGPDSAKLDKIF 362


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 400 FIALHASSASCKFSNSMKAKPGG 332
           F+A     A+C+FS   +A+ GG
Sbjct: 458 FLATVVEEAACRFSAVAQAQLGG 480


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 381 LPPPASSQIL*KRNLGDLVLPKLS 310
           L P  S  I  K+ + DLV+ KLS
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLS 229


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 381 LPPPASSQIL*KRNLGDLVLPKLS 310
           L P  S  I  K+ + DLV+ KLS
Sbjct: 206 LQPVVSDPIFDKKAMSDLVICKLS 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,562
Number of Sequences: 438
Number of extensions: 3614
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)