Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O07
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261...    36   0.043
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    32   0.53 
06_01_0486 - 3455030-3455770                                           29   4.9  
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    28   8.6  
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624...    28   8.6  

>08_02_1596 +
           28125331-28125556,28125986-28126047,28126160-28126199,
           28126934-28127029,28127138-28127169,28127274-28127349,
           28127430-28127483,28127916-28127941
          Length = 203

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 126 RLIMASPRRSRAIAVLX-TETIRGHXTFTXVQNGKVHVQGGITGLPPGXYXFPVHE 290
           R ++ +    +A+AVL  T  + G  T T    G   V   +TGL PG + F +HE
Sbjct: 43  RALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHE 98


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/56 (32%), Positives = 20/56 (35%)
 Frame = +1

Query: 430 PXXXXPPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPP 597
           P    PP F  PP PP  G PP   P +   G  P  +            P  PPP
Sbjct: 43  PPQGAPPPFLAPPPPPPPGPPPPHQP-QFNFGPGPPQQQQPPPPPQMYYQPPPPPP 97



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 429 PPXXGXPPFXTTPXXPXXGXPPXXXSXXKXXGXPP 533
           PP    PPF   P  P  G PP           PP
Sbjct: 43  PPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPP 77


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
 Frame = +1

Query: 445 PPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFF---XXXXXKXXTPXXPPPXXTPXX 615
           PP    PP PP+   PP   P        P    +            TP  PPP   P  
Sbjct: 81  PPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPT 140

Query: 616 XP 621
            P
Sbjct: 141 PP 142


>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 127 GSSWLHHAGPAPLPFYXQKRLEA-TSHSLXFKMGKFTFRGASL 252
           G S  HHAG + LP Y Q+ +++ T  +    MG  + +G +L
Sbjct: 459 GRSGAHHAGRSNLPSYGQRVMDSGTGRAEKTTMGSGSNKGGTL 501


>03_02_0185 -
           6239421-6239480,6239971-6240024,6240523-6240578,
           6241108-6241183,6241276-6241307,6241421-6241516,
           6242498-6242599,6242728-6242833
          Length = 193

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 204 FTXVQNGKVHVQGGITGLPPGXYXFPVH 287
           F     G   V+G +TGL PG + F +H
Sbjct: 30  FQDPSTGYTEVRGRVTGLAPGLHGFHIH 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,887,399
Number of Sequences: 37544
Number of extensions: 255704
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)