Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O07
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   5.0  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/70 (22%), Positives = 19/70 (27%)
 Frame = +1

Query: 430 PXXXXPPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTP 609
           P    PP +  PP PP+   P    P        P     +         P   PP   P
Sbjct: 100 PPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPP 159

Query: 610 XXXPXGGXXP 639
              P     P
Sbjct: 160 LYPPPPNPPP 169


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/65 (26%), Positives = 18/65 (27%)
 Frame = +1

Query: 445 PPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPX 624
           PP    PP PP  G  P   P +      P                  PPP       P 
Sbjct: 299 PPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPV 358

Query: 625 GGXXP 639
           GG  P
Sbjct: 359 GGAAP 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,391,810
Number of Sequences: 59808
Number of extensions: 214286
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)