Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_O07
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 38 0.010
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 38 0.013
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 38 0.013
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 38 0.013
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.21
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.21
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.21
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 31 1.1
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 138 ASPRRSRAIAVLXTETIRGHXTFTXV-QNGKVHVQGGITGLPPGXYXFPVHE 290
A +RA+AVL ET+ G T +N + ++G I GL PG + F VH+
Sbjct: 20 AQKMSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQ 71
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 SRAIAVLXTETIRGHXTFTXV-QNGKVHVQGGITGLPPGXYXFPVHE 290
+RA+AVL ET+ G T +N + ++G I GL PG + F VH+
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQ 49
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 SRAIAVLXTETIRGHXTFTXV-QNGKVHVQGGITGLPPGXYXFPVHE 290
+RA+AVL ET+ G T +N + ++G I GL PG + F VH+
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQ 49
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 SRAIAVLXTETIRGHXTFTXV-QNGKVHVQGGITGLPPGXYXFPVHE 290
+RA+AVL ET+ G T +N + ++G I GL PG + F VH+
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQ 49
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/72 (30%), Positives = 25/72 (34%)
Frame = +1
Query: 445 PPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPX 624
PP PP PP G PP G P + +P PPP +P P
Sbjct: 232 PPAGSPPPPPPPKGSPP-----LAGSGSPPPPPAAGSPPPPRTGSPP-PPPTGSPPPPPA 285
Query: 625 GGXXPXXXGGVP 660
GG P G P
Sbjct: 286 GGSPPPPRAGSP 297
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Frame = +1
Query: 463 PPXPPFXGXPPGXX---PXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPXGGX 633
PP PP G PP P G P + +P PPP P G
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP--RGSPPTGSL 312
Query: 634 XPXXXGGVP 660
P GG P
Sbjct: 313 PPPQAGGSP 321
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/72 (30%), Positives = 25/72 (34%)
Frame = +1
Query: 445 PPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPX 624
PP PP PP G PP G P + +P PPP +P P
Sbjct: 253 PPAGSPPPPPPPKGSPP-----LAGSGSPPPPPAAGSPPPPRTGSPP-PPPTGSPPPPPA 306
Query: 625 GGXXPXXXGGVP 660
GG P G P
Sbjct: 307 GGSPPPPRAGSP 318
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Frame = +1
Query: 463 PPXPPFXGXPPGXX---PXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPXGGX 633
PP PP G PP P G P + +P PPP P G
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP--RGSPPTGSL 333
Query: 634 XPXXXGGVP 660
P GG P
Sbjct: 334 PPPQAGGSP 342
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/72 (30%), Positives = 25/72 (34%)
Frame = +1
Query: 445 PPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPX 624
PP PP PP G PP G P + +P PPP +P P
Sbjct: 238 PPAGSPPPPPPPKGSPP-----LAGSGSPPPPPAAGSPPPPRTGSPP-PPPTGSPPPPPA 291
Query: 625 GGXXPXXXGGVP 660
GG P G P
Sbjct: 292 GGSPPPPRAGSP 303
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Frame = +1
Query: 463 PPXPPFXGXPPGXX---PXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTPXXXPXGGX 633
PP PP G PP P G P + +P PPP P G
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP--RGSPPTGSL 318
Query: 634 XPXXXGGVP 660
P GG P
Sbjct: 319 PPPQAGGSP 327
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 132 IMASPRRSRAIAVLXTETIRGHXTFTXVQNGK-VHVQGGITGLPPGXYXFPVHE 290
+++ RA+AVL + G T G+ +G I GL PG + F +H+
Sbjct: 16 VVSKVESKRAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQ 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,794,697
Number of Sequences: 27780
Number of extensions: 174831
Number of successful extensions: 496
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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