Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O07
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    38   0.012
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    35   0.083
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   3.1  

>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 135 MASPRRS-RAIAVLXTET-IRGHXTFTXVQNGKVHVQGGITGLPPGXYXFPVH 287
           M +PR + RA+A++  +  +RG   F    +G  HV G I+GL PG + F +H
Sbjct: 1   MEAPRGNLRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIH 53


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 156 RAIAVLX-TETIRGHXTFTXVQNGKVHVQGGITGLPPGXYXFPVHE 290
           +A+AVL  T  + G  T T   +G   V   ITGL PG + F +HE
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHE 111


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/64 (26%), Positives = 20/64 (31%)
 Frame = +1

Query: 430 PXXXXPPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTP 609
           P    PP +  PP PP    PP   P        P    +          P  PPP  +P
Sbjct: 441 PPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVY---SPPPPSPPPPPPPVYSP 497

Query: 610 XXXP 621
              P
Sbjct: 498 PPPP 501



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/60 (26%), Positives = 17/60 (28%)
 Frame = +1

Query: 430 PXXXXPPXFXXPPXPPFXGXPPGXXPXKXXXGXXPXXKXFFXXXXXKXXTPXXPPPXXTP 609
           P    PP +  PP PP    PP   P        P               P  PPP   P
Sbjct: 487 PPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPP 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,741
Number of Sequences: 28952
Number of extensions: 178264
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)