Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O05
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           38   0.014
03_06_0471 + 34169562-34169892,34170121-34170347                       33   0.40 
02_04_0382 - 22501041-22501279,22501717-22501810                       32   0.53 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.8  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   3.8  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    29   3.8  
01_01_0082 + 625198-625719                                             29   6.6  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +1

Query: 205 TPNPFFA--QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRP 369
           TP P  A  QP     Y P  + P  V PP  Y P  +G  P     N + Y +PP GRP
Sbjct: 378 TPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRP 436

Query: 370 YFKPTPFPGARG 405
              P P  GA G
Sbjct: 437 NSGPPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 247 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 396
           Y P    P    PP  Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 223 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 390
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY DPP    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 391 PGARGG 408
           P   GG
Sbjct: 87  PYYGGG 92


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 265 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 381
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +1

Query: 208 PNPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDPPQGRPYF 375
           P P+  QP  G  Y P      Y   P ++     P    Y P   G  Y   PQG+PY 
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286

Query: 376 KPTPF 390
            P P+
Sbjct: 287 PPQPY 291


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 253 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 393
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +1

Query: 229 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 396
           P++ NG  P+     +  PP           P+ NGA    PP G P     P PG
Sbjct: 638 PSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPGGNPAPPAGPQPG 693


>01_01_0082 + 625198-625719
          Length = 173

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 229 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARG 405
           P  G GY P  +     NP   YNP  +G+    N   Y+ PP G  Y +   F P A  
Sbjct: 97  PYGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAA 151

Query: 406 G 408
           G
Sbjct: 152 G 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,691
Number of Sequences: 37544
Number of extensions: 385471
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)