Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O05
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    31   0.83 
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   4.4  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   4.4  

>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +1

Query: 208 PNPFFAQPT-VGNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFK 378
           PN   +QPT +G G  P    P  V PP  Y   P  +G    DNGA     P G PY  
Sbjct: 346 PNLPPSQPTPIGGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPS 402

Query: 379 PTPFPGARG 405
             P P   G
Sbjct: 403 DVPAPYPSG 411


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 324
           QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 324
           QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 62  QPLVGNSYDP----PVRFDPPYAYRATATGYMP 90


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 226 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 324
           QP VGN Y+P    P   +PP  Y     GY P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMP 119


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +1

Query: 205 TPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFK 378
           T  P    P  G  + P  N   + N P  +     GY   P         PP+G  Y++
Sbjct: 28  TQQPGGQNPQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQ 85

Query: 379 PT--PFPGARGGK 411
           P   P+   +GGK
Sbjct: 86  PKNYPYKPGKGGK 98


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -3

Query: 263 LSIGS*PFPTVGWAKNGFGVIDHKLSQRFPLP*RGLERWP*PAERGRKS*RISFLYD-HE 87
           +S GS  FPT+G+  + + +I++ +S+ F         W    E  R+S ++ FL+D + 
Sbjct: 211 ISYGSCQFPTLGFVTDRYKMIENFVSEPF---------WKLIVEHTRESHKVEFLWDRNR 261

Query: 86  LSQAENIKVVXQXLRE 39
           L   + + ++    +E
Sbjct: 262 LFDRDTVDILHDECKE 277


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -3

Query: 263 LSIGS*PFPTVGWAKNGFGVIDHKLSQRFPLP*RGLERWP*PAERGRKS*RISFLYD-HE 87
           +S GS  FPT+G+  + + +I++ +S+ F         W    E  R+S ++ FL+D + 
Sbjct: 211 ISYGSCQFPTLGFVTDRYKMIENFVSEPF---------WKLIVEHTRESHKVEFLWDRNR 261

Query: 86  LSQAENIKVVXQXLRE 39
           L   + + ++    +E
Sbjct: 262 LFDRDTVDILHDECKE 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,077
Number of Sequences: 27780
Number of extensions: 315908
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)