Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O04
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   111   8e-25
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   107   1e-23
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  111 bits (266), Expect = 8e-25
 Identities = 58/112 (51%), Positives = 69/112 (61%)
 Frame = +3

Query: 120 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGXNVRDLI 299
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG +V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 300 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
           T++ SG                                   SDDDMGFGLFD
Sbjct: 61  TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  107 bits (257), Expect = 1e-23
 Identities = 57/112 (50%), Positives = 68/112 (60%)
 Frame = +3

Query: 120 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGXNVRDLI 299
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG +V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 300 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
           T++ SG                                   SDDDMGFGLFD
Sbjct: 61  TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 108 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 245
           S  KM+ K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 34  SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 144 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGXNVRDLITNIGS 314
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
 Frame = +3

Query: 195 EKISTILKAAAVDVEPYWPGLFAKALEGXNVRDLITNIGSG---VXXXXXXXXXXXXXXX 365
           + +  IL A  VD +     L    L G  V +LI    +G   V               
Sbjct: 21  DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80

Query: 366 XXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
                              SDDDMGFGLFD
Sbjct: 81  GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 423 SDDDMGFGLFD 455
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 423 SDDDMGFGLFD 455
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,523
Number of Sequences: 27780
Number of extensions: 160742
Number of successful extensions: 333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)