Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N22
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  29   6.5  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   8.6  

>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 527 VWDKPQLECSEKNALFVEI 583
           VWD  QLEC +KNA  V I
Sbjct: 2   VWDLAQLECKKKNATLVTI 20


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 PYLTNTACVGALIQTCHCNDGLVFNADRKCVPIS 354
           PY     C+G L ++ +  DG++   DR  VP+S
Sbjct: 561 PYGEPVTCLGHLCESIYAQDGVLLLNDRVVVPMS 594


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +1

Query: 262  TNTA---CVGAL-IQTCHCNDGLVF-NADRKCVPISDC 360
            TNT    C+  L   TC C  G  F N+ R+C+ I++C
Sbjct: 2113 TNTCPGRCINRLGSYTCDCPRGYTFDNSSRRCIDINEC 2150


>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 165

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 265 NTACVGALIQ-TCHCNDGLVFNADRKCVPISDC 360
           N  C  +L   TC C +G   N+  KC  +++C
Sbjct: 15  NEVCANSLGSFTCQCAEGYERNSQGKCADVNEC 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,362
Number of Sequences: 59808
Number of extensions: 333881
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)