Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N22
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    27   0.30 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    27   0.30 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 232 CVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 360
           C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 50  CQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 232 CVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 360
           C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 50  CQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 282 ADASGVSQVRVVAGPHAGGHQSNGHFQGIH 193
           A A+ V    +V+ P +  HQ  G   G+H
Sbjct: 380 AVAAAVQSSSIVSSPDSARHQRIGGCNGLH 409


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 513 LSCLDPNXPSL 481
           ++CLDPN P L
Sbjct: 593 INCLDPNLPKL 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,396
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)