Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N20
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)                   45   7e-05
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                33   0.23 

>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
          Length = 351

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = +1

Query: 163 AWRKHCDIKDVENFLEDQRLEERL-GKFETKPDSXXXXXXXXXXXXXXXXXXXXPISLKK 339
           +WRK  DIKDVE   E+ R +ER  G    KPD+                        K+
Sbjct: 22  SWRKFTDIKDVEEHFEEARRDERTGGPASEKPDASLFFVDTKSKEPETDGTQN-----KR 76

Query: 340 LRRSKLGEFPKCFEILLPDSKVQDPNTKRNTVKPVGSKPT 459
            R+ KL    KC ++LLPD++++   +K+  VK    K T
Sbjct: 77  SRKRKL---LKCDQLLLPDTRLKPIGSKKRKVKQSSKKKT 113


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/65 (26%), Positives = 24/65 (36%)
 Frame = +3

Query: 636 IPSTLCDEFIPPXAXLPXVLPXXPSPXXTXPXCPXLWXXPCRXXMSPXPXXXLSPXXXXX 815
           +P    + FIPP +  P + P  P+P    P  P +   P    + P P     P     
Sbjct: 252 LPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPYIPPAPPNLFIPSAPPN 311

Query: 816 PPXXP 830
           P   P
Sbjct: 312 PHIPP 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,200,358
Number of Sequences: 59808
Number of extensions: 238607
Number of successful extensions: 423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)