Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N17
         (1270 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7QW77 Cluster: Chromosome chr3 scaffold_199, whole gen...    36   2.2  
UniRef50_Q42421 Cluster: Chitinase; n=1; Beta vulgaris subsp. vu...    34   9.0  

>UniRef50_A7QW77 Cluster: Chromosome chr3 scaffold_199, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr3 scaffold_199, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 290

 Score = 35.9 bits (79), Expect = 2.2
 Identities = 26/102 (25%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
 Frame = +2

Query: 383 PPTARAXXXXKXRXTXXXPEPXNAXXAAPRRXSP--RLXXXXTXAQXXPXPQXPXPHEXP 556
           PPTA              P P     A P   +P        T     P P  P P   P
Sbjct: 112 PPTAVTSPPASSPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPP 171

Query: 557 XXGXXXAXXPPXTXXXPXPPXTWXPXXTXXXSQXSPGXAAAP 682
                 A  PP T     PP    P  T   +   P   A+P
Sbjct: 172 PATPPPATPPPATPPPATPPPATPPPATPPPATPPPAHLASP 213


>UniRef50_Q42421 Cluster: Chitinase; n=1; Beta vulgaris subsp.
           vulgaris|Rep: Chitinase - Beta vulgaris subsp. vulgaris
          Length = 439

 Score = 33.9 bits (74), Expect = 9.0
 Identities = 26/106 (24%), Positives = 31/106 (29%)
 Frame = +2

Query: 374 PLKPPTARAXXXXKXRXTXXXPEPXNAXXAAPRRXSPRLXXXXTXAQXXPXPQXPXPHEX 553
           P +PPT R       R     P P       P   +PR           P P  P P   
Sbjct: 53  PPRPPTPRPPPP---RPPTPRPPPPRPPTPRPPPPTPRPPPPRPPTPRPPPP--PTPRPP 107

Query: 554 PXXGXXXAXXPPXTXXXPXPPXTWXPXXTXXXSQXSPGXAAAPDNP 691
           P         PP T   P PP    P  +    +  P    +P  P
Sbjct: 108 PPRPPTPRPPPPPTPRPPPPPTPRPPPPSPPTPRPPPPPPPSPPTP 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,033,576
Number of Sequences: 1657284
Number of extensions: 5001408
Number of successful extensions: 7593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6648
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 129174826121
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)