Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_N17
(1270 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 32 0.92
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 2.1
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 2.8
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 4.9
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 31.9 bits (69), Expect = 0.92
Identities = 25/111 (22%), Positives = 28/111 (25%), Gaps = 5/111 (4%)
Frame = +2
Query: 374 PLKPPTARAXXXXKXRXTXXXPEPXNAXXAAPRRXSPRLXXXXTXAQXXPXPQX-----P 538
P KPPT + T P P P P P P P
Sbjct: 48 PPKPPTVKPPTHTPKPPTVKPPPPYIPCPPPPYTPKPPTVKPPPPPYVKPPPPPTVKPPP 107
Query: 539 XPHEXPXXGXXXAXXPPXTXXXPXPPXTWXPXXTXXXSQXSPGXAAAPDNP 691
P+ P PP T P PP + P P P P
Sbjct: 108 PPYVKPPPPPTVKPPPPPTPYTPPPPTPYTPPPPTVKPPPPPVVTPPPPTP 158
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.7 bits (66), Expect = 2.1
Identities = 30/143 (20%), Positives = 34/143 (23%), Gaps = 2/143 (1%)
Frame = +2
Query: 269 PXXSTPPXLXRXGPPXNDPK--KXQXXXSXXXAXFXLPLKPPTARAXXXXKXRXTXXXPE 442
P STPP L PP P + P PP P
Sbjct: 415 PIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPP 474
Query: 443 PXNAXXAAPRRXSPRLXXXXTXAQXXPXPQXPXPHEXPXXGXXXAXXPPXTXXXPXPPXT 622
P + P P P P P P P + PP P P
Sbjct: 475 PPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYC 534
Query: 623 WXPXXTXXXSQXSPGXAAAPDNP 691
P S P + P P
Sbjct: 535 TRPPPPPPHSPPPPQFSPPPPEP 557
Score = 28.7 bits (61), Expect = 8.6
Identities = 28/136 (20%), Positives = 33/136 (24%)
Frame = +2
Query: 284 PPXLXRXGPPXNDPKKXQXXXSXXXAXFXLPLKPPTARAXXXXKXRXTXXXPEPXNAXXA 463
PP + PP P + P PP+ R P P
Sbjct: 491 PPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTR-----PPPPPPHSP 545
Query: 464 APRRXSPRLXXXXTXAQXXPXPQXPXPHEXPXXGXXXAXXPPXTXXXPXPPXTWXPXXTX 643
P + SP + P P PH P P P P P T
Sbjct: 546 PPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPPPIYPYLSPPPPPTPVSSPPPTP 605
Query: 644 XXSQXSPGXAAAPDNP 691
S P P P
Sbjct: 606 VYSPPPPPPCIEPPPP 621
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +2
Query: 521 PXPQXPXPHEXPXXGXXXAXXPPXTXXXPXPPXTWXPXXTXXXSQXSP-GXAAAPDNP 691
P P P P E P + PP + P PP T P T S P P++P
Sbjct: 98 PSPPPPLPTEAPPPANPVSSPPPESSP-PPPPPTEAPPTTPITSPSPPTNPPPPPESP 154
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.5 bits (63), Expect = 4.9
Identities = 29/138 (21%), Positives = 36/138 (26%)
Frame = +2
Query: 278 STPPXLXRXGPPXNDPKKXQXXXSXXXAXFXLPLKPPTARAXXXXKXRXTXXXPEPXNAX 457
S PP + PP + P + PP A T P
Sbjct: 55 SPPPPVVSSPPPSSSPPPSPPVITSPPPTVASSPPPPVVIASPPPSTPATTPPAPPQTVS 114
Query: 458 XAAPRRXSPRLXXXXTXAQXXPXPQXPXPHEXPXXGXXXAXXPPXTXXXPXPPXTWXPXX 637
P SP T P P P E P P + P P T P
Sbjct: 115 PPPPPDASPS-PPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPP 173
Query: 638 TXXXSQXSPGXAAAPDNP 691
S P ++ P +P
Sbjct: 174 PPATSASPP--SSNPTDP 189
Score = 28.7 bits (61), Expect = 8.6
Identities = 26/135 (19%), Positives = 37/135 (27%), Gaps = 1/135 (0%)
Frame = +2
Query: 281 TPPXLXRXGPPXNDPKKXQXXXSXXXAXFXLPLKPPTARAXXXXKXRXTXXXPE-PXNAX 457
+PP + PP S + + PPT + P P
Sbjct: 47 SPPPVVSSSPPPPVVSSPPPSSSPPPSPPVITSPPPTVASSPPPPVVIASPPPSTPATTP 106
Query: 458 XAAPRRXSPRLXXXXTXAQXXPXPQXPXPHEXPXXGXXXAXXPPXTXXXPXPPXTWXPXX 637
A P+ SP + + P P P P P T P P +
Sbjct: 107 PAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTPT 166
Query: 638 TXXXSQXSPGXAAAP 682
T P +A+P
Sbjct: 167 TTTSPPPPPATSASP 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,006,556
Number of Sequences: 28952
Number of extensions: 121828
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3277297416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -