Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N15
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   6.2  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   6.2  
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   6.2  
SB_59317| Best HMM Match : APT (HMM E-Value=7.8)                       28   8.2  
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)                      28   8.2  
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)                     28   8.2  
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 152 KNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 274
           + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 230 EEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 42  FDSLLLGWKHEVCLNSGWACSRRAQQCSTKA 134
           FD + +G K EV L SG   SRRA QC+ +A
Sbjct: 128 FDVIGVG-KEEVMLRSGKLNSRRAVQCTVRA 157


>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 128 QSRAP*RTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKA- 304
           ++R P   K+ D   V KQK +L   + +  ++      K+ +DY +E ++     KK  
Sbjct: 393 EARLPQSWKDADIAPVPKQKPVLDINKHLRPISLTPVLSKLAEDYIVEQHLKPAVLKKVD 452

Query: 305 VEEF 316
           V +F
Sbjct: 453 VNQF 456


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 42   FDSLLLGWKHEVCLNSGWACSRRAQQCSTKA 134
            FD + +G K EV L SG   SRRA QC+ +A
Sbjct: 1853 FDVIGVG-KEEVMLRSGKLNSRRAVQCTVRA 1882


>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
          Length = 229

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 128 QSRAP*RTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKA- 304
           ++R P   K+ D   V KQK +L   + +  ++      K+ +DY +E ++     KK  
Sbjct: 27  EARLPQSWKDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVD 86

Query: 305 VEEF 316
           V +F
Sbjct: 87  VNQF 90


>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
          Length = 279

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 128 QSRAP*RTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKA- 304
           ++R P   K+ D   V KQK +L   + +  ++      K+ +DY +E ++     KK  
Sbjct: 100 EARLPQSWKDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVD 159

Query: 305 VEEF 316
           V +F
Sbjct: 160 VNQF 163


>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
          Length = 602

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 128 QSRAP*RTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKK 301
           ++R P   K+ D   V KQK IL   + +  ++      K+ +DY +E ++     KK
Sbjct: 339 EARLPQSWKDADIAPVPKQKPILDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKK 396


>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 181 LFNKYGIHIFCSLWCSALVLHC*ARRLQAQPELRQTSCFQ 62
           L  KY   + C + CS +V  C  +     P ++ +S F+
Sbjct: 283 LIGKYSFSVMCVVSCSLIVTCCILKVFNKDPNIKMSSWFK 322


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 281 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 159
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,317,188
Number of Sequences: 59808
Number of extensions: 422498
Number of successful extensions: 1031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)