Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_N15
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 32 0.55
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 32 0.55
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 31 0.96
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 29 3.9
At5g27230.1 68418.m03248 expressed protein ; expression support... 29 3.9
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 28 6.8
At1g09910.1 68414.m01115 expressed protein 28 6.8
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom... 28 8.9
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 28 8.9
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 580 KHFRVYFIRSRNNETVAIRALDNSDVEGIQEXTLIEMHTRKTGSLVERFKVLS 422
K R + R + + AL N+DVE +E L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -1
Query: 580 KHFRVYFIRSRNNETVAIRALDNSDVEGIQEXTLIEMHTRKTGSLVERFKVLS 422
K R + R + + AL N+DVE +E L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 299 KAVEEFLKMYRTGFMPKNLEFSVFYD 376
KA+E F +MY+TG MP + +S D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 638 ILKPQLSMAFT-RKTTTSFNKANYSNAXLYNNEXQRLTYFTEDIGMNA 778
ILK Q S A T K T F K +SN L + R + F+ I +NA
Sbjct: 88 ILKEQWSPALTISKVTLIFQKHRFSNVRLCSKSIARASTFSARILLNA 135
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 158 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 322
V A+ +EK++K L D S E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 224 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 319
N +DEY K DYD + +D T K+A + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 HEVCLNSGWACSRRAQQCSTKAEHHKEQKM 158
HE LN+G CS Q ++ H K+ +M
Sbjct: 15 HETALNAGHHCSEGTDQGTSGLSHRKDHRM 44
>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 728
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 93 WACSRRAQQCSTKAEHHKEQKMWMPYLLKSKRKFCPSSKM 212
W C RRA + E H Q+ L +SK+K SSK+
Sbjct: 21 WRCKRRALEGKKMCESHHSQQS----LKRSKQKVAESSKL 56
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 176 EKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 349
EK +K+L+ Q + QL D+ K+G Y E +DN ++ + +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 350 NLEFSVF 370
LEF +F
Sbjct: 142 ALEFRLF 148
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,619
Number of Sequences: 28952
Number of extensions: 289952
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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