Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N13
         (879 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD7D64 Cluster: PREDICTED: hypothetical protein;...    37   0.78 
UniRef50_A0R658 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  

>UniRef50_UPI0000DD7D64 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 511

 Score = 36.7 bits (81), Expect = 0.78
 Identities = 22/54 (40%), Positives = 23/54 (42%)
 Frame = +2

Query: 155 GSAPLANRPXIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTPFPGARG 316
           GS   A RP  V PP  S P G G      GA      Q  P  +P P PGA G
Sbjct: 389 GSGERATRPECVAPPSPSAPRGRGQG--GGGAGETGGGQRAPAPRPRPRPGAGG 440


>UniRef50_A0R658 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium smegmatis str. MC2 155|Rep: Putative
           uncharacterized protein - Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155)
          Length = 368

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +2

Query: 149 GXGSAPLANRPXIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTPFPGARG 316
           G   A L       NP   S+  G G A  D+GA  V  P+G    +P+P PG  G
Sbjct: 17  GLFMAGLGGALAFANPDAGSDTAGQGPAGADSGAPQVAGPRGTHGQRPSPRPGGPG 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,055,671
Number of Sequences: 1657284
Number of extensions: 6880678
Number of successful extensions: 17431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17381
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)