Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N13
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   0.92 
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   4.9  
05_03_0637 - 16465433-16466242                                         28   8.6  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 161 APLANRPXIVNPPKASNPXGNGSAPLDNGA--SYVDRPQGRPYFKPTPFPGARG 316
           AP  + P  V PP    P  +G AP   G   S  + P GRP   P P  GA G
Sbjct: 395 APPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMYEPPVGRPNSGPPPSYGAGG 448


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 202 SLQPXWXRLRTSRQRCILRGPSPRPTLLQAYPFPWCSRWXVKXIL 336
           S+   W RLR +  R +L+ P+P P +  +       RW  K +L
Sbjct: 831 SIIDSWDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875


>05_03_0637 - 16465433-16466242
          Length = 269

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 198 PKPPTLMXTAPHLSTTVHLTWTVPKADLTSSLPLSLVLA 314
           P PP L   A   ++TV  T T P   L ++ P ++++A
Sbjct: 168 PPPPPLYYAATASTSTVTTTTTAPPPQLAAAAPAAVLVA 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,616
Number of Sequences: 37544
Number of extensions: 210636
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)