Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N13
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 141 TLXATAPHLLPTARXSLILPKPP-----TLMXTAPHLSTTVHLTWTVPKADLTSSLPLS 302
           TL AT P L  T + +LI   P      TL+ T P L+T   L  T P+A +T +  ++
Sbjct: 723 TLIATTPSL--TTQTTLIATTPSLTTQTTLIATTPSLTTQTTLIATTPEASITQTTTIA 779


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 SLILPK-PPTLMXTAPHLSTTVHLTWT-VPKADL 281
           SLI+P+ PP  + ++   STTV L+W+ VP  DL
Sbjct: 563 SLIVPRRPPVFIDSSSTSSTTVDLSWSHVPTDDL 596


>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 153 TAPHLLPTARXSLILPKPPTLMXTAPHLSTTVHLTWTVP 269
           T   LL T   SL+   PP +  T P ++TT  L  T P
Sbjct: 3   TTTPLLVTTTPSLVTTTPPLVTTTPPLVTTTPSLVTTTP 41



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 138 PTLXATAPHLLPTARXSLILPKPPTLMXTAPHLSTTVHLTWT-VPKADLTSSLPL 299
           P L  T P L+ T   SL+   P  L+ T P L TT  L  T  P  D T++LPL
Sbjct: 20  PPLVTTTPPLVTTT-PSLVTTTP-LLVTTTPSLVTTTPLLVTNTPPLD-TTTLPL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,507
Number of Sequences: 59808
Number of extensions: 206083
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)