Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N13
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    28   7.7  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 138 PTLXATAPHLLPTARXSLILPKPPTLMXTA--PHLSTTVHLTWTVPKADLTSSL 293
           PT   TAP   PT   S     PP    T+  P  +T++  T T P   +T+++
Sbjct: 533 PTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTTTV 586


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 138 PTLXATAPHLLPTARXSLILPKPPTLMXTA--PHLSTTVHLTWTVPKADLTSSL 293
           PT   TAP   PT   S     PP    T+  P  +T++  T T P   +T+++
Sbjct: 589 PTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTTTV 642


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = +2

Query: 149 GXGSAPLANRPXIVNPPKASN--PXGNGSAPLDNGASYVDRPQGRPYFKPTPFPGARG 316
           G G AP    P  V PP      P  +G+   DNGA     P G PY    P P   G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDGT---DNGAGDTPYPVGPPYPSDVPAPYPSG 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,990
Number of Sequences: 27780
Number of extensions: 163114
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)