Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N13
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    29   5.4  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    28   9.5  
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi...    28   9.5  

>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 194 PPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTPFP 304
           PP    P    S PLD    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 171 PTARXSLILPKPPTLMXT-APHLSTTVHLTWTVPKADLTSSLPLSLV 308
           PTA  S+  P PPT++ T AP  S    +      +D+ S  PL++V
Sbjct: 369 PTAGASVPAPIPPTVVSTPAPPASINAEMDLLGSLSDVFSPNPLAIV 415


>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
           to alanine aminotransferase 2 SP|P34106 from Panicum
           miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
           from Oryza sativa
          Length = 540

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 186 SLILPKPPTLMXTAPHLSTTVHLTWTVPKADLTSSLPLSL 305
           S + P+P  L  + P LS     T  +  +D TSSLP++L
Sbjct: 26  SFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSSLPVTL 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,501,912
Number of Sequences: 28952
Number of extensions: 147940
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)