Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N12
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.88 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   8.2  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   8.2  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 ACRPSCAQHQPSPASGPACRDGTTPPRTTQRK 122
           +C P+  +H PS AS  A   GTT P++ + +
Sbjct: 160 SCLPAPDRHTPSSASSRASETGTTSPQSMRNQ 191


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 330 YVAQDQPRPVSWIRWHPSLLNT 395
           Y AQ Q RP S +RWH SLL+T
Sbjct: 191 YEAQ-QKRPFS-LRWHTSLLST 210


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 175 KQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNC 318
           K    D+ + K   +D T  + +PI   +         NE + NN NC
Sbjct: 69  KSSSHDSFKAKPKNYDSTSNSNEPISFNEPDSSNSHHNNESICNNDNC 116


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 467 YEYNLSKAMLLVPTINNVINYCFFSVQERRMP 372
           +  +L K ++     N +IN  FF+  ++RMP
Sbjct: 770 FSTSLEKTVINFENSNGIINNTFFNESKKRMP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,774
Number of Sequences: 5004
Number of extensions: 51272
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)