Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N12
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0778 - 6009290-6010287,6010351-6010444                           29   4.9  
11_08_0077 - 28180918-28183269,28183553-28184608                       28   8.6  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    28   8.6  

>07_01_0778 - 6009290-6010287,6010351-6010444
          Length = 363

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 227 VQSCMQAFLRSASAFTCFRSSLSGRHDTATNNTAKAQENNGLHIGTKLMNSVDQLATRH 51
           V SC+ A   + + F CF   L+ R      +T   Q+N  +    KL N+V +  + H
Sbjct: 272 VMSCLDAHTPTQALFPCFHLPLTTRFYEMLESTCAEQQNWRIE-DPKLRNNVRKAVSSH 329


>11_08_0077 - 28180918-28183269,28183553-28184608
          Length = 1135

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
 Frame = -2

Query: 269 SPVFPAQIGSRLALVQSCMQAFLRSASAFT-----CFRSSLSGRHDTATN---NTAKAQE 114
           +P+F   IGSR+  + + + A  +SA+AF+      +    + R  +AT+   +    +E
Sbjct: 114 NPLFAHDIGSRIKALNTRLDAICKSAAAFSFLKLEAYEDMAAPRRSSATDRRTDPVLGKE 173

Query: 113 NNGLHIGTKLMNSVDQLATR 54
            +G+ +G K+      L  R
Sbjct: 174 RSGV-VGEKIEEDTSALVQR 192


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 187 ADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQ 351
           +D + ++AC  +C+   L   C      +P S G+  + N  NC   D   ++ Q
Sbjct: 724 SDQQSQQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFDETVEVHQ 778


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,487
Number of Sequences: 37544
Number of extensions: 328372
Number of successful extensions: 983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)