Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N11
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    28   7.6  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    28   7.6  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    28   7.6  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      28   7.6  

>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 436 QNQGITQERTCEQKASKRPGTVKRPR----CWRFSIGSAPLTSITKIDAQVRGGETRQDY 603
           QN  I +E T    A  R G  +R      CW   I +A  +       +V    +  D 
Sbjct: 208 QNGTIMREATSHPFAP-RNGLARRVHEKYSCWELEIKNAQTSDSGSYMCRVTASASDLDV 266

Query: 604 KDTRRFPLEAPRAL 645
            DT +F ++APR +
Sbjct: 267 TDTMQFEVKAPRQI 280


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 436 QNQGITQERTCEQKASKRPGTVKRPR----CWRFSIGSAPLTSITKIDAQVRGGETRQDY 603
           QN  I +E T    A  R G  +R      CW   I +A  +       +V    +  D 
Sbjct: 208 QNGTIMREATSHPFAP-RNGLARRVHEKYSCWELEIKNAQTSDSGSYMCRVTASASDLDV 266

Query: 604 KDTRRFPLEAPRAL 645
            DT +F ++APR +
Sbjct: 267 TDTMQFEVKAPRQI 280


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 436 QNQGITQERTCEQKASKRPGTVKRPR----CWRFSIGSAPLTSITKIDAQVRGGETRQDY 603
           QN  I +E T    A  R G  +R      CW   I +A  +       +V    +  D 
Sbjct: 208 QNGTIMREATSHPFAP-RNGLARRVHEKYSCWELEIKNAQTSDSGSYMCRVTASASDLDV 266

Query: 604 KDTRRFPLEAPRAL 645
            DT +F ++APR +
Sbjct: 267 TDTMQFEVKAPRQI 280


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 436 QNQGITQERTCEQKASKRPGTVKRPR----CWRFSIGSAPLTSITKIDAQVRGGETRQDY 603
           QN  I +E T    A  R G  +R      CW   I +A  +       +V    +  D 
Sbjct: 208 QNGTIMREATSHPFAP-RNGLARRVHEKYSCWELEIKNAQTSDSGSYMCRVTASASDLDV 266

Query: 604 KDTRRFPLEAPRAL 645
            DT +F ++APR +
Sbjct: 267 TDTMQFEVKAPRQI 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,616,367
Number of Sequences: 27780
Number of extensions: 337961
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)