Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N09
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    26   7.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   7.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   7.5  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   9.9  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 410 YANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGGPELLPAKRL---RISRHAFXI 568
           Y N IN +   T   I  +C     RIA+  + GG  L PA R+    I  H F I
Sbjct: 165 YQNPINLSSQDT---IGVICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWI 217


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 163 CDLAMHQEQC*RKVLKLXQHCV 228
           CD + H  QC + +L++  HC+
Sbjct: 107 CDRSHHCSQCNKCILRMDHHCM 128


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 404 NEYANHINDAQNSTNQLIDFVCYKDGD 484
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -2

Query: 588 SGEALFQIXKACLEILSLLAGSNSGPPSAMNKAIRSPSL*HTKSMS*LVLFWASLMWFAY 409
           +G   FQ   A ++++SLL  + +   S++  AI +P +   K  +  V+ W + +W  Y
Sbjct: 233 AGSQQFQFG-AEVQVVSLLYTALT--MSSIFLAIVAPKVEGAKRQTLFVIIWLAFLWIGY 289

Query: 408 S 406
           S
Sbjct: 290 S 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,673
Number of Sequences: 5004
Number of extensions: 60327
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)