Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N09
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226     29   6.0  
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458...    28   7.9  

>08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226
          Length = 298

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 280 KLKKPSQTVHSTRVFKKYCDKSAQLKGCISSVLQGVR 390
           KL+K +  V S  +F   C    ++K C S ++ GVR
Sbjct: 43  KLRKENPGVVSEALFALSCGPDLRVKSCASCIVNGVR 79


>10_08_0429 +
           17845303-17845431,17845508-17845684,17845782-17845895,
           17846386-17846520,17847659-17847790,17847919-17848071,
           17848574-17848709,17849338-17849443,17849538-17849730,
           17849803-17849963,17850227-17850442,17850732-17850997,
           17851505-17851779,17851871-17852327,17853973-17854055,
           17854260-17854469,17854897-17855373,17855462-17855743,
           17855910-17856236,17856418-17856507,17856788-17856899,
           17857004-17857104,17857524-17857568
          Length = 1458

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 386 CVLCVGNEYANHINDAQNST--NQLIDFVCYKDGDRIALFIAEGGPEL 523
           CVL +   +   I+D++N T     IDF+C ++G+  A F+    PEL
Sbjct: 652 CVLALSGTW---IHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPEL 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,438,609
Number of Sequences: 37544
Number of extensions: 420057
Number of successful extensions: 971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)