Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N09
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     26   1.5  
SB_34513| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_1434| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          28   8.0  
SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_52558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 277 PKLKKPSQTVHSTRVFKKYCDKSAQLKGCISSVLQGVRPLCRQRIC--EPHQ*CPKQYQS 450
           P L+K   T+H    F    D S +  GC    L    P+ +Q +   EP   CP +  +
Sbjct: 106 PTLEKGPDTLHLKSTFASDVD-SQRSPGCKLPNLDPFDPMVKQFMSPMEP-MFCPGEMYT 163

Query: 451 THRLCVLQGRRPDC 492
           ++  CVL+ R+  C
Sbjct: 164 SYHDCVLKARKKGC 177


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 26.2 bits (55), Expect(2) = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 359 AVSARCCRACVLCVGN-EYANHINDA 433
           ++S RCCR   L VG    A H+N A
Sbjct: 77  SLSLRCCRLMALAVGALHVARHVNTA 102



 Score = 23.0 bits (47), Expect(2) = 1.5
 Identities = 15/65 (23%), Positives = 25/65 (38%)
 Frame = +2

Query: 419 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGGPELLPAKRLRISRHAFXI*NRASPLWNP 598
           H+      +NQ++D VC      +   +    PE    +R R ++    +    SP   P
Sbjct: 133 HLKACHFFSNQVVDTVCQHKWRNLKEVLVPSLPERQTGQRNRTNKLLMNLHRVTSP--EP 190

Query: 599 PILEP 613
           P   P
Sbjct: 191 PATRP 195


>SB_34513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 432 ASLMWFAYSLPTQRTHALQHRADTAFQLSTLVTVLLENPRRVHRLAWLL 286
           +S M  A+S+ T+   A Q  A+T+F    +  V+ EN +RV  L W++
Sbjct: 46  SSRMHAAHSMATRS--ATQTTAETSFITEEIDAVIQENAKRVQELQWVV 92


>SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 585 HCGIRQYLSLVEKCAKVDEMTSCIVKSLEECXHRPPQTWRNPD 713
           H G  +YL++VE C  + E    + + L  C     +  R  D
Sbjct: 335 HTGCAKYLAMVESCFVLSERVGVLTRELNSCRQENAELRRRLD 377


>SB_30081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 546 ILSLLAGSNSGPPSAMNKAI-RSPSL*HTKSMS*LVLFWASLMWFAYSLPTQRTHALQHR 370
           I SL+  S SGP   +N A+ ++P + H  S S L+     L+W A+   T    A+ + 
Sbjct: 391 ISSLVGRSVSGP---LNDALHKTPMMLHQLS-SLLISGCMLLIWLAHDYVTFSVFAVLYG 446

Query: 369 ADTAFQLSTLVTVLLENPRRVHR 301
                 L+T+  +LL   +  HR
Sbjct: 447 FGNGVGLTTMFLLLLNTVKPCHR 469


>SB_1434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 432 ASLMWFAYSLPTQRTHALQHRADTAFQLSTLVTVLLENPRRVHRLAWLL 286
           +S M  A+S+ T+   A Q  A+T+F    +  V+ EN  RV  L W++
Sbjct: 46  SSRMHNAHSMATRS--ATQTTAETSFITEEVDAVIQENTERVQELQWVV 92


>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 446 WYCFGHH*CGSHIRCLHKG 390
           W+C+G+   G   RC+H+G
Sbjct: 302 WFCWGYFSYGESSRCIHRG 320


>SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 512 GPELLPAKRLRISR-HAFXI*NRASPLWNPPIL 607
           G  L+PA+R++     A  +    SPLW+PP+L
Sbjct: 271 GDLLIPAQRIQAEYISALKLLRSKSPLWSPPVL 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,647,965
Number of Sequences: 59808
Number of extensions: 489161
Number of successful extensions: 1266
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)