Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N09
         (829 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128203-1|BAC87322.1|  547|Homo sapiens protein ( Homo sapiens ...    31   3.9  

>AK128203-1|BAC87322.1|  547|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46335 fis, clone TESTI4046073, weakly  similar
           to Rho-GTPase-activating protein 6. ).
          Length = 547

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -1

Query: 202 LFFSIVLGALRGHNRCNLTKVISQHTGSE-NRIK---TVFHIIVTRN 74
           +F   VLG   GHN    TK++S H+ SE  R+K   T +H +V R+
Sbjct: 29  IFLVSVLGGAPGHNPDRRTKMVSIHSLSELERLKLQETAYHELVARH 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,758,369
Number of Sequences: 237096
Number of extensions: 2241628
Number of successful extensions: 5010
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5010
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)