Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N08
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   2e-25
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                  113   2e-25
SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)            63   3e-10
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)                      39   0.005
SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7)                   39   0.006
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.014
SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.075
SB_53350| Best HMM Match : MTS (HMM E-Value=0.00021)                   31   1.6  
SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)                       30   2.8  
SB_43765| Best HMM Match : Ataxin-2_N (HMM E-Value=6.6)                29   4.9  
SB_28632| Best HMM Match : MTS (HMM E-Value=0.0038)                    29   4.9  
SB_5879| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.5  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      29   6.5  
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3)                      28   8.6  

>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score =  113 bits (272), Expect = 2e-25
 Identities = 67/159 (42%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
 Frame = +2

Query: 383 PDKNVTAEEMTSR------DYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKT 544
           P   VT+EE+  R      D YF  Y    IH EMLKD+ RT +Y+ A+      F+ K 
Sbjct: 95  PVSYVTSEEVHRRNLAWQDDEYFADYGSLKIHLEMLKDKPRTESYRMAIEQGAGYFKDKV 154

Query: 545 VLDIGCGTGILSMFAAKAG-ATKVLXIECSNIVDYARKIIEANRLDDVIXIIKGKXXXXX 721
           VLD+GCGTGILS+F A+ G A+KV  +E S I     +II+ N LDD I +I+GK     
Sbjct: 155 VLDVGCGTGILSLFCAREGKASKVYAVEASEIAKLTEEIIKQNNLDDKITVIQGK-IEEV 213

Query: 722 XXXXXXXIIISXWMGYCLFYXXMLDTVLYAXXXWXXXMG 838
                  II+S WMG  L +  ML++VL A   W    G
Sbjct: 214 ELPEKVDIIVSEWMGTFLVFEFMLESVLTARDIWLKPNG 252


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score =  113 bits (272), Expect = 2e-25
 Identities = 55/80 (68%), Positives = 62/80 (77%)
 Frame = +2

Query: 401 AEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLDIGCGTGILS 580
           A EMTS DYYFDSYAHF        DEVRTLTY+N+MYHNKHLF+ K VLD+GCGTGILS
Sbjct: 148 ASEMTSADYYFDSYAHF--------DEVRTLTYRNSMYHNKHLFRDKIVLDVGCGTGILS 199

Query: 581 MFAAKAGATKVLXIECSNIV 640
           MFAAKAGA  V  I  +N++
Sbjct: 200 MFAAKAGAKHVYAITNTNLI 219



 Score = 79.4 bits (187), Expect = 4e-15
 Identities = 38/68 (55%), Positives = 43/68 (63%)
 Frame = +2

Query: 620 IECSNIVDYARKIIEANRLDDVIXIIKGKXXXXXXXXXXXXIIISXWMGYCLFYXXMLDT 799
           IE S+IVDY++ II+ N  D VI +IKGK            IIIS WMGYCLFY  MLDT
Sbjct: 281 IEMSSIVDYSKTIIKDNNFDSVITLIKGKVEDVELPVEKVDIIISEWMGYCLFYESMLDT 340

Query: 800 VLYAXXXW 823
           VLYA   W
Sbjct: 341 VLYARDKW 348


>SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)
          Length = 59

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 30/58 (51%), Positives = 39/58 (67%)
 Frame = +2

Query: 476 DEVRTLTYKNAMYHNKHLFQGKTVLDIGCGTGILSMFAAKAGATKVLXIECSNIVDYA 649
           D +RT TY+ AM  N   FQ K V+D+G G+GILS FA +AGA KV  IE S++  +A
Sbjct: 1   DSIRTSTYQRAMLQNVADFQDKVVIDVGAGSGILSFFAIQAGARKVYAIEASSMAAHA 58


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 458 HEEMLKDEVRTLTYKNAMYHNKHLFQG-KTVLDIGCGTGILSMFAAKAGATKVLXIECSN 634
           H  ML D  R L YK A+  +  +  G   VLDIG G+GILSMFA +AGA KV    C N
Sbjct: 137 HFRMLNDRQRNLAYKKAI--SNAVSNGCDIVLDIGSGSGILSMFAVQAGAKKV--YACFN 192

Query: 635 I 637
           +
Sbjct: 193 V 193


>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
          Length = 230

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 518 NKHLFQGKTVLDIGCGTGILSMFAAKAGATKVLXIECSNIVDYARKIIEANR 673
           NK L   K ++++G GTG++ M A   G   VL  +  + + + R  IE NR
Sbjct: 69  NKELVHQKRIIELGAGTGLVGMVAGLLGGRDVLITDRKSALSHTRLNIEENR 120


>SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7)
          Length = 289

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 446 HFGIHEEMLKDEVRTLTYKNAMYHNKHLFQGKTVLDIGCGTGILSMFAAKAGATKVL 616
           ++G       +++R  ++K      K  FQGK VLDIGC TGI+++  AK    +V+
Sbjct: 170 YYGYRNNNQSEDIRLKSFK------KEWFQGKDVLDIGCNTGIVTLAIAKNYEPRVI 220


>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +2

Query: 389 KNVTAEEMTSRDYYFDSYAHFGIHEEMLK 475
           K V+  E      YF SY+HFGIHEEMLK
Sbjct: 50  KKVSDMEDDEDGAYFSSYSHFGIHEEMLK 78


>SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 35.1 bits (77), Expect = 0.075
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 545 VLDIGCGTGILSMFAAKAGATKVLXIE 625
           +LDIG GTG+L+M AAK+GA  V   E
Sbjct: 24  MLDIGTGTGLLAMMAAKSGADTVTACE 50


>SB_53350| Best HMM Match : MTS (HMM E-Value=0.00021)
          Length = 211

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 533 QGKTVLDIGCGTGILSMFAAKAGA 604
           +GK V D+GCG G+LS+     GA
Sbjct: 48  EGKLVADLGCGCGVLSVGCVMMGA 71


>SB_3762| Best HMM Match : MTS (HMM E-Value=0.11)
          Length = 286

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 527 LFQGKTVLDIGCGTGILSMFAAKAGAT 607
           L Q + VL++GCG G+  +FA    AT
Sbjct: 114 LLQNRRVLELGCGAGLPGIFALLQNAT 140


>SB_43765| Best HMM Match : Ataxin-2_N (HMM E-Value=6.6)
          Length = 282

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 317 METMDVAQEGTSTVSTPVVENGPDKNVTAEEMTSRDYYFDSYAHFGIHEEMLKDEVRTL 493
           +E    AQE TS+   PV ENG  K     E+    +  + Y H G+  + L+D+   L
Sbjct: 32  LECKRKAQELTSSDRAPVNENGRKKGYI--EVMKDLWNANRYEHLGLKAQNLRDQASRL 88


>SB_28632| Best HMM Match : MTS (HMM E-Value=0.0038)
          Length = 300

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 536 GKTVLDIGCGTGILSMFAAKAGATKVLXIECS 631
           G  +LD+GCG G+L+   A+ GA KV  I+ S
Sbjct: 115 GFKMLDVGCGGGLLAEPLARLGA-KVTGIDAS 145


>SB_5879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 542 TVLDIGCGTGILSMFAAKA--GATKVLXIECSNIVDYARKIIEAN 670
           T+L+IGCGTG+L+    K   GA  V  I  ++ ++  R++ + N
Sbjct: 64  TILEIGCGTGLLTDTLTKVLKGADNV-KIMAADPLESMREVFQKN 107


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 418 RRHFFGSNILVRSVFHNRR*NRRCSFLSYVH 326
           +RHF   N L R    NRR  R C+  +Y H
Sbjct: 602 KRHFVSCNTLSRQSLANRRDARACAPKAYTH 632


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 524 HLFQGKTVLDIGCGTGILSMFAAKAGATKVLXIECS-NIVDYARKIIEANRLDDV 685
           +L  G+ VLD+GCG G  + +  K    +V  ++ S N+++  ++      +D V
Sbjct: 51  NLAPGQKVLDVGCGIGGSAFYMIKNFHVEVRAVDLSTNMIEIGKQRAAEFEIDKV 105


>SB_26411| Best HMM Match : GAS2 (HMM E-Value=2.3)
          Length = 360

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 443 AHFGIHEEMLKDEVR-TLTYKNAMYHNKHLFQG 538
           AHFG+ +  L++E+R  +T  NA+ + K  FQG
Sbjct: 115 AHFGLQQHELQEEIRKQITEHNALMYGK--FQG 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,548,945
Number of Sequences: 59808
Number of extensions: 401166
Number of successful extensions: 762
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)