Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N07
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.054
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.67 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 698 PPPPPXPXGXXGGXSXXXXPPPP 766
           PPPPP P G  G       PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
           PPPPP   G        PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
           PPPPP     G      PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 698 PPPPPXPXGXXGGXSXXXXPPP 763
           PPPPP P     G S    P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
           PPPP P  G        PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
           PPPPP   G        PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
 Frame = +2

Query: 686 KKKXPPPPPXPXGXXG------GXSXXXXPPPP 766
           KK+ PPPPP      G      G S    PPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 9/36 (25%)
 Frame = +1

Query: 688 KKXXXPPPPPX---------GXGGGXXXXXXPPPPP 768
           KK   PPPPP          G G        PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,577
Number of Sequences: 5004
Number of extensions: 20346
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)