Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_N07
(884 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 33 0.19
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 33 0.33
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 31 1.3
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 30 1.8
At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family... 29 5.4
At1g61080.1 68414.m06877 proline-rich family protein 29 5.4
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 28 7.2
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 9.5
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 9.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 9.5
At3g50140.1 68416.m05481 expressed protein contains Pfam profile... 28 9.5
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 9.5
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 28 9.5
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPP 765
PPPPP GGG PPPP
Sbjct: 52 PPPPPSSSGGGGSYYYSPPPP 72
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP GG PPPP
Sbjct: 51 PPPPPPSSSGGGGSYYYSPPPP 72
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
PPPP P GG PPPPP
Sbjct: 681 PPPPPPGGGPPPPPGGGPPPPP 702
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP G G PPPPP
Sbjct: 681 PPPPPPGGGPPPPPGGGPPPPP 702
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPPP 766
PPPPP P G PPPP
Sbjct: 679 PPPPPPPPGGGPPPPPGGGPPPP 701
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP G PPPPP
Sbjct: 682 PPPPPGGGPPPPPGGGPPPPPP 703
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP GG PPPP
Sbjct: 680 PPPPPPPGGGPPPPPGGGPPPP 701
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP G PPPPP
Sbjct: 260 PPPPPLPMAAGKGVAAPPPPPP 281
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPP 763
PPPPP P G + PPP
Sbjct: 233 PPPPPLPMAVRKGVAAPPLPPP 254
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPP 763
PPPPP P G + PPP
Sbjct: 260 PPPPPLPMAAGKGVAAPPPPPP 281
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
PPPP G G PPPPP
Sbjct: 622 PPPPPSFGSTGNKRQAQPPPPP 643
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPP G G PPPPP
Sbjct: 623 PPPPSFGSTGNKRQAQPPPPPP 644
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = +1
Query: 703 PPPPPXGXGG-GXXXXXXPPPPP 768
PPPPP G G PPPPP
Sbjct: 621 PPPPPPSFGSTGNKRQAQPPPPP 643
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 692 KXPPPPPXPXGXXGGXSXXXXPPPP 766
+ PPPPP P S PPPP
Sbjct: 598 RPPPPPPPPPSSRSIPSPSAPPPPP 622
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPPP 766
PPPPP P G PPPP
Sbjct: 620 PPPPPPPSFGSTGNKRQAQPPPP 642
>At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family
protein similar to extensin [Catharanthus roseus]
gi|1486263|dbj|BAA13175; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 96
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPPP 766
PPPPP P PPPP
Sbjct: 52 PPPPPPPQSHAAAYKRYSPPPPP 74
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPP 763
PPPPP P G + PPP
Sbjct: 605 PPPPPPPMAMANGAAGPPPPPP 626
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 686 KKKXPPPPPXPXGXXGGXSXXXXPPP 763
+ + P PPP P G G PPP
Sbjct: 571 QNRAPSPPPMPMGNSGSGGPPPPPPP 596
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 698 PPPPPXPXGXXGGXSXXXXPPP 763
PPPPP P G + PPP
Sbjct: 590 PPPPPPPMPLANGATPPPPPPP 611
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -3
Query: 765 GGGGXXXXXXPPXX-PXGXGGGGG 697
GGGG PP P G GGGGG
Sbjct: 393 GGGGPMSGGLPPGFRPMGGGGGGG 416
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
PPPP P G G PPPPP
Sbjct: 388 PPPPAPPPGSG---GPKPPPPP 406
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
PPPP P G G PPPPP
Sbjct: 388 PPPPAPPPGSG---GPKPPPPP 406
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
PPPP P PPPPP
Sbjct: 592 PPPPTPVSSPPPTPVYSPPPPP 613
>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 508
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 686 KKKXPPPPPXPXGXXGGXSXXXXPPPP 766
K++ PPPPP P PPPP
Sbjct: 6 KRRPPPPPPPPPRLLVLPPLPPPPPPP 32
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 702 PPPPXPXGGXGXXXXXXPPPPP 767
PPPP P G G PPPPP
Sbjct: 408 PPPPPPPGKKGAGP---PPPPP 426
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP G G PPPPP
Sbjct: 409 PPPPPPGKKGAGP----PPPPP 426
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 703 PPPPPXGXGGGXXXXXXPPPPP 768
PPPPP PPPPP
Sbjct: 59 PPPPPPAVNMSVETGIPPPPPP 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,924
Number of Sequences: 28952
Number of extensions: 289756
Number of successful extensions: 2558
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -