Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N06
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   177   1e-45
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    29   0.69 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   3.7  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    26   8.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   8.5  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  177 bits (432), Expect = 1e-45
 Identities = 83/132 (62%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
 Frame = +2

Query: 212 KVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFA 391
           ++ KPAPDF  TAVVNG F ++KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A  FA
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63

Query: 392 GIDCQVIGVSTDSEFSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD-GFAL 568
             + QVI  STDSE+SHLA+INTPRK+GGLG + IPLLAD   ++S+DY VL++D G A 
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 569 RGLFIIDRNGTL 604
           RGLF+ID  G L
Sbjct: 124 RGLFLIDPKGVL 135



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +3

Query: 606 RHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGWNPDTNADTIKPNPKDSKEYFQK 785
           R +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W+    +DTI  + K+ ++YF K
Sbjct: 136 RQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWH--KGSDTI--DTKNPEKYFSK 191


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 275 LKLSDFTG-KYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLAW 451
           ++L D T  K +V+F YP   T  C  +   F D        D +V+G+S D+  +  A+
Sbjct: 65  IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 182 FSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCPTE 355
           F+ +S+T     Q P P F   +  +G+F     +    K V L  YP   TF   TE
Sbjct: 257 FTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 509 DYKKQISKDYDVLLDDGFALRGLFIIDRNGTLASHVG 619
           DY   IS D   LLD  +  +G +  DRN  L+ H+G
Sbjct: 32  DYDVNISSDNPRLLDS-YRPKGNYGRDRNSPLSRHIG 67


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 35  PLPRPWEXLKXPELYN-----PKSLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTST 199
           P   PWE +  P+        P SL +  K        S + +SPA + +  +     ST
Sbjct: 313 PTAEPWEPISAPKKQEFGVSLPPSLASPEKGGIS----STTSVSPAAQASPVL-----ST 363

Query: 200 TRAPKVQKPAP 232
           T  PKVQKP P
Sbjct: 364 TTQPKVQKPVP 374


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 161 KVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLDFTF 340
           KV +R N    +T   P++        A ++++   N++  +DF GK+ +++F       
Sbjct: 79  KVLERQNDKVLATIGRPQLG------GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPD 132

Query: 341 VCPTEL 358
           +CP EL
Sbjct: 133 ICPDEL 138


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 717  WNPDTNADTIKPNPKDS 767
            WNP+   D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,028
Number of Sequences: 5004
Number of extensions: 69870
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)