Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N06
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   8.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 477 DWEKWKFLCLLITKNRFQKIMMYYLMMGLH 566
           DW  WKF  L+   + F  +  +  ++ LH
Sbjct: 861 DWRHWKFPNLVEVLDEFPSVRPFAPLLLLH 890


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 317 FYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGV 418
           F   D    CP     ++D+  +   +DC  +GV
Sbjct: 752 FDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGV 785



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +2

Query: 338 FVCPTELIAFS-DKAKDFAGIDCQVIGVSTDSEFSHLAWINTPRKD-GGLGKMEIPLLAD 511
           F+C  E   F+     DF   DC++   +    ++   W NT   D  GLG  EIP    
Sbjct: 735 FLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTW-NTNAVDCSGLGVEEIP---- 789

Query: 512 YKKQISKDYDVLLDDGFALRGL 577
             ++I  D   +  DG  LR L
Sbjct: 790 --RRIPMDATEVYLDGNVLREL 809


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 659 PPGQGLPVRRQARRGVPGRLEPGHQRRHHQAEPQGQ 766
           PP Q L   +        + +P  Q++  Q +PQ Q
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQ 844


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 204 ELLKFRSLLQTSVRQQLSMESSINLNF 284
           EL K R LLQ ++  QL       LNF
Sbjct: 58  ELQKLRLLLQGNINNQLFQTPCELLNF 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,223
Number of Sequences: 438
Number of extensions: 4797
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)