Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_N05
(882 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 275 3e-74
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 275 3e-74
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 274 4e-74
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 274 4e-74
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 274 4e-74
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 274 4e-74
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 274 4e-74
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 274 4e-74
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 274 4e-74
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 273 1e-73
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 271 5e-73
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 184 6e-47
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 155 5e-38
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 134 6e-32
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 104 7e-23
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 97 1e-20
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 97 1e-20
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 96 3e-20
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 96 3e-20
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 37 0.017
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 37 0.017
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.1
U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir relat... 31 1.4
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 30 2.5
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 3.3
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 7.7
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 275 bits (674), Expect = 3e-74
Identities = 126/131 (96%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 275 bits (674), Expect = 3e-74
Identities = 126/131 (96%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 41/43 (95%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 30 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 89
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 90 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 149
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 150 VPIYEGYALPH 160
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 196 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 241
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 162 KAGFAGDDAPRAVFPSIVGRPRHQG 236
+AGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQG 29
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 166 DLAGRDLTDYLMKILTERGYSFTTT 190
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 274 bits (673), Expect = 4e-74
Identities = 125/131 (95%), Positives = 129/131 (98%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHT 163
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 164 VPIYEGYALPH 174
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 210 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 255
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 180 DLAGRDLTDYLMKILTERGYSFTTT 204
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 273 bits (669), Expect = 1e-73
Identities = 124/130 (95%), Positives = 128/130 (98%)
Frame = +1
Query: 241 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 420
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 421 LLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 600
LLTEAPLNPK NREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+VLDSGDGV+HTV
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTV 120
Query: 601 PIYEGYALAH 630
PIYEGYAL H
Sbjct: 121 PIYEGYALPH 130
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVAL F QEM L KSYE PDGQVIT+G +R
Sbjct: 166 VRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNER 211
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDYLMKILTE G SFTTT
Sbjct: 136 DLAGRDLTDYLMKILTERGYSFTTT 160
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 271 bits (664), Expect = 5e-73
Identities = 123/131 (93%), Positives = 128/131 (97%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 417
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHP
Sbjct: 43 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHP 102
Query: 418 VLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 597
VLLTEAPLNPK NREKMTQIMFETFN+PAMYV IQAVLSLYASGRTTGIVLD+GDGV+HT
Sbjct: 103 VLLTEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGVTHT 162
Query: 598 VPIYEGYALAH 630
VPIYEGYAL H
Sbjct: 163 VPIYEGYALPH 173
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/41 (90%), Positives = 41/41 (100%)
Frame = +3
Query: 114 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 59.3 bits (137), Expect = 4e-09
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = +2
Query: 740 VRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
VRDIKEKLCYVA F E+ L KSYE PDGQVITIG +R
Sbjct: 209 VRDIKEKLCYVAHDFESELAAAASSSSLEKSYELPDGQVITIGNER 254
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSFTTT 722
DLAGR LTDY+MKILTE G +FTTT
Sbjct: 179 DLAGRDLTDYMMKILTERGYTFTTT 203
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 184 bits (449), Expect = 6e-47
Identities = 79/132 (59%), Positives = 106/132 (80%), Gaps = 1/132 (0%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEH 414
VM G D ++G +A+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEH
Sbjct: 46 VMAGGLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEH 105
Query: 415 PVLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 594
PVLLT+APLNP NRE+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG+VLDSGDGV+H
Sbjct: 106 PVLLTDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDGVTH 165
Query: 595 TVPIYEGYALAH 630
VPI +G+A+ H
Sbjct: 166 AVPIVKGFAMKH 177
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = +3
Query: 114 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 230
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKY 43
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 155 bits (375), Expect = 5e-38
Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Frame = +1
Query: 175 PATTRPAPSSRPSWVALATRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD 354
PA P+ RP + +T+ V + KD VG+E R +L + YP+++GI+ NWDD
Sbjct: 28 PAHIFPSMVGRP--IVRSTQRVG-NIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDD 84
Query: 355 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVL 531
M +W HTF E L + P+E +LLTE PLNP NREKM Q+MFE + ++YVA+QAVL
Sbjct: 85 MAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVL 144
Query: 532 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALAHV 633
+LYA G TG+V+DSGDGV+H P+YEG+AL H+
Sbjct: 145 TLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHL 178
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 132 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 224
+VVDNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +2
Query: 716 HHRXXXXXVRDIKEKLCYVALXFXQEMXXXXXXXXLXKSYEXPDGQVITIGXKR 877
+H VR +KEKLCY+A QE L + Y PDG+VI +G +R
Sbjct: 205 NHSADFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRVIRLGGER 258
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 648 DLAGRXLTDYLMKILTEXGXSF 713
D+AGR +T YL+K+L + G +F
Sbjct: 183 DIAGRDITKYLIKLLLQRGYNF 204
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 134 bits (325), Expect = 6e-32
Identities = 65/138 (47%), Positives = 88/138 (63%), Gaps = 9/138 (6%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEH 414
V G+ D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H
Sbjct: 56 VGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDH 115
Query: 415 PVLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVL 570
LLTE PLN NRE +IMFE+FN P +Y+A+QAVL+L AS + TG+V+
Sbjct: 116 FFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVI 175
Query: 571 DSGDGVSHTVPIYEGYAL 624
DSGDGV+H +P+ +GY +
Sbjct: 176 DSGDGVTHCIPVADGYVI 193
Score = 35.5 bits (78), Expect = 0.051
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 215
M + A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 104 bits (250), Expect = 7e-23
Identities = 46/103 (44%), Positives = 69/103 (66%)
Frame = +1
Query: 322 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKXNREKMTQIMFETFNSP 501
++ G+I +W+ EKI H++ N L P EHPVL +E+ N + REK+T+IMFE F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 502 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALAH 630
A Y++ VLS +A GRT G+++DSG + VP+++GYA+ H
Sbjct: 154 AYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVFDGYAVTH 196
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 117 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 215
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 366
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 89.4 bits (212), Expect = 3e-18
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 357
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDM
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 366
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +3
Query: 108 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 236
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 238 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 366
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +1
Query: 388 ELRVAPEEHPVLLTEAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 567
EL+V P ++ VLL+ P ++ QI E + + Q L LYA TTG+V
Sbjct: 266 ELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPSLILYAYDVTTGVV 325
Query: 568 LDSGDGVSHTVPIYEGYAL 624
+D G+ V + VP+ +GY +
Sbjct: 326 VDIGERV-NIVPVIDGYVV 343
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 37.1 bits (82), Expect = 0.017
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Frame = +1
Query: 256 QKDSYVGDEAQSKRGILTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 429
+K +V E + +L Y PIE G + NWD ++IW TF + V + LT
Sbjct: 39 KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALT 97
Query: 430 EAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT----GIVLDSG 579
+ + ++I+F+ F ++ + L S + +V+DSG
Sbjct: 98 DNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKHSNKINNEKCAVVVDSG 151
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 37.1 bits (82), Expect = 0.017
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Frame = +1
Query: 256 QKDSYVGDEAQSKRGILTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 429
+K +V E + +L Y PIE G + NWD ++IW TF + V + LT
Sbjct: 39 KKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALT 97
Query: 430 EAPLNPKXNREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT----GIVLDSG 579
+ + ++I+F+ F ++ + L S + +V+DSG
Sbjct: 98 DNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKHSNKINNEKCAVVVDSG 151
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 587 TPSPESSTIPVVRPEAYSESTAWMATYMAGEL 492
TP P SST+PVV P ++ T +Y+A L
Sbjct: 865 TPQPLSSTMPVVAPSTSTQPTPTTGSYLANTL 896
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 139 STMAPACARPVSPATTRPAPSSRP 210
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 286 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 152
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 286 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 152
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 286 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 152
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 286 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 152
GP P S P +P +P G P G +GAS+P +P P
Sbjct: 105 GPPGPGGSPGKPGKPGKP---GAPGAPGNPGKGASAPCEPVTQPP 146
>U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir related
protein 2.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.4
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +1
Query: 274 GDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKX 453
G + K TL + E + + D + K W T + L + + + PL+ K
Sbjct: 183 GRSCRGKLRDATLDWDTEISL-NHLDRIRKAWKQTSHL-LCIGTSLEIIPMGSLPLDAKS 240
Query: 454 NREKMTQIMF-ETFNSPAMYVAIQA--VLSLYASGRTTGIVLDSGDGVSHTVPI 606
K T I + ET + + AI A L LY+ G+ +D GD + VPI
Sbjct: 241 KGIKTTTINYQETAHEKIVETAIHADVKLILYSLCNALGVNVDLGDDLPDEVPI 294
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 286 GPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPA 173
GPR P P +P P G P G+ +RG P+
Sbjct: 170 GPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPS 207
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +1
Query: 16 FTIGNS*DLTRSLAAVESIPASQHKHTQSSRCATTMLLRL*STMAPACARPVSPATTRPA 195
FT+ ++ +T + A+ S ++ TQ+ +T + ST+AP ++ S + A
Sbjct: 452 FTVTSTPTITSTQGAMASSSSNSPTSTQAISSSTVTTVAS-STIAPTSSQESSSIASSSA 510
Query: 196 PSSRPSWVALATRXVMVGMGQKDSYVG 276
PS + + ++T V GQ S G
Sbjct: 511 PSQSTTVITVST-TATVSSGQSTSTFG 536
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 304 GYLSCSGPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASSPAKPALHMP 152
G C P P P +P P G P G + +GA++P +P+ P
Sbjct: 112 GCTGCCNPGPPGPG-GRPGKPGTPGKPGAPGNPGASGKGAAAPCEPSTPPP 161
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +3
Query: 222 PRHQGRDGRYGPERL--LRG*RGPEQERYPHSEVPHRARYHH 341
PR G GR+GP G GP + P R +HH
Sbjct: 376 PRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHH 417
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +1
Query: 130 RL*STMAPACARPVSPATTRPAPSSRPSWVALATR 234
RL S +AP A P S A TR APS + VA R
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRR 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,472,526
Number of Sequences: 27780
Number of extensions: 334195
Number of successful extensions: 1376
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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