Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N03
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    84   2e-17
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   7.9  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
 Frame = +1

Query: 334 YEYYS--LPLCLPKNGTFVYKSENLGEVLRGDRIVNTPYEVHMAENIXCKLLCHRKNVPI 507
           YEYY      C P+N     +SE+LG VL GDR+ N+P E+ M EN  C  LC    +P 
Sbjct: 65  YEYYDERFHFCRPEN--IAKQSESLGSVLFGDRLYNSPIEIKMLENQDCVPLC-ASIIPS 121

Query: 508 NWSVEDSEKVASRIEHEYFVHLLVDNLPVATKVINVETLERTIEQGYRLGYMSEGKAYIN 687
           +    D   +   I   Y V+  +DNLPVAT +    +   ++  G+ LG  +E    + 
Sbjct: 122 S----DVSFIRDLISKNYVVNWNIDNLPVATYLEGTNSKNYSLSPGFPLGKNTEKGVILF 177

Query: 688 NHXXXXXKYHKHSQDSYRVVGFEVEXI 768
           NH     +YH  S D +RVVG  V+ +
Sbjct: 178 NHYDIVIEYHTTSSDQHRVVGAYVKPV 204


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 547 IEHEYFVHLLVDNLPVATKVINVE 618
           + H +FV ++ DN  V  KVIN++
Sbjct: 199 VYHRHFVDMIKDNWLVEPKVINIK 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,652
Number of Sequences: 5004
Number of extensions: 62282
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)