Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N03
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)                       64   1e-10
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
          Length = 392

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 34/78 (43%), Positives = 48/78 (61%)
 Frame = +1

Query: 445 EVHMAENIXCKLLCHRKNVPINWSVEDSEKVASRIEHEYFVHLLVDNLPVATKVINVETL 624
           +V M  N  C +LC     P+  S + S+ VA RI  EY++H+++DNLPVATK   +ET 
Sbjct: 43  KVEMNVNKKCVVLC-----PMKISADMSKVVADRIFKEYYIHMVLDNLPVATKFHMIETG 97

Query: 625 ERTIEQGYRLGYMSEGKA 678
           +   E GY+LGYM   K+
Sbjct: 98  QAQYEHGYKLGYMIGDKS 115



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 13/22 (59%), Positives = 21/22 (95%)
 Frame = +1

Query: 232 YGFYVPGVAPVEFKKGQKIEVK 297
           YGFY+PG+AP+++ +GQK++VK
Sbjct: 22  YGFYLPGIAPIDYTQGQKLDVK 43


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 325 QLPYEYYSLPLCLPKNGTFVYKSENLGEVLRG 420
           Q  Y YYSLP C  +  T  +  E LGE ++G
Sbjct: 48  QETYNYYSLPFCRGEKRTISHYHETLGENIQG 79


>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1177

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 529 EKVASRIEHEYFVHLLVDNLPVATKVINVETLER 630
           EK+ S +E  Y      +N+P+   VIN E LER
Sbjct: 121 EKIQSMLERVYQREQDYENMPIGGDVINNEELER 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,157,597
Number of Sequences: 59808
Number of extensions: 425101
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)