Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N02
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    56   8e-09
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    43   6e-05
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    37   0.003
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    37   0.004
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   2.6  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.9  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEPP-------TDPV---TLEIIQQPAVIATP 435
           RG ++     + A KSGK+ GAA+DV+  EP         D +   T E+     +I TP
Sbjct: 284 RGTVVDIPALVDASKSGKIAGAAIDVYPSEPAGNGKDKFVDSLNSWTSELTHCKNIILTP 343

Query: 436 HLGASTKEAQVRVGQEIAEQLVNLVKPG 519
           H+G ST+EAQ  +G E++E L   +  G
Sbjct: 344 HIGGSTEEAQYNIGIEVSEALTRYINEG 371



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 177 ADYITLHTPXIESTRNFINADVLKXCXKGVKIIN 278
           AD+++LH P    T+N I++       +G  +IN
Sbjct: 248 ADFVSLHVPASPETKNMISSKEFAAMKEGSYLIN 281


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 25/56 (44%), Positives = 29/56 (51%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEPPTDPVTLEIIQQPAVIATPHLGAST 453
           RG +I E  F+ A+KSGKV  A LDVF  EP  +   LE      V   PH G  T
Sbjct: 251 RGAIINEDAFIKAIKSGKVARAGLDVFLNEPTPNKFWLEC---DKVTIQPHCGVYT 303


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXE 375
           RGGL+     + A++SG+VGG A+DV+E E
Sbjct: 235 RGGLVDTKALVKAIESGQVGGCAMDVYEGE 264



 Score = 33.9 bits (74), Expect = 0.029
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 150 MELEDXWPLADYITLHTPXIESTRNFINADVLKXCXKGVKIIN 278
           +E ++    AD++ LH P    T + ++  +L    KGVKIIN
Sbjct: 190 VEQQEVLAKADFLCLHCPLTPDTEHLVDEKLLASMKKGVKIIN 232


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXE 375
           RGGLI     + A+ SG+VGG A+DV+E E
Sbjct: 235 RGGLIDTKALVDAIDSGQVGGCAIDVYEGE 264



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 177 ADYITLHTPXIESTRNFINADVLKXCXKGVKIIN 278
           AD++ LH P   ST + +N+D L    KGV I+N
Sbjct: 199 ADFLCLHCPLTPSTTHIVNSDSLALMKKGVTIVN 232


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 493 AQQSPGQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQPRPPFQT 329
           AQQSP  L P LP  +   ++   + A   S    +R+A+P R     P+P   T
Sbjct: 445 AQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVSPQPSSPT 499


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 103 TLSCLLISAPSSIAP---RWSWRTFGL*RTTSPC 195
           ++SCL+   P+ ++     W+W+  G+ R T  C
Sbjct: 56  SISCLVYGFPNKVSALKFEWNWQNLGISRYTKDC 89


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 405  NLQSDRIGRRLXLEHVQSSPAHLSRLQSXQEIXLLNKPASTP 280
            +L   R GR       + SP HL+RL     +   +KP S P
Sbjct: 1093 SLHESRSGRVYMSPLTEISPEHLARLAKNTTLLSYSKPLSYP 1134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,335
Number of Sequences: 5004
Number of extensions: 31249
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)