Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N02
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          79   5e-15
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   4e-04
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)          40   0.002
SB_20743| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               29   4.8  
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)                28   8.4  

>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 44/85 (51%), Positives = 54/85 (63%), Gaps = 12/85 (14%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEPPTDPVTL------------EIIQQPAVIA 429
           RGG+I E   L  L+SG VGGA LDVF  EPPT  +T             ++++ P VIA
Sbjct: 99  RGGIIDEEALLRGLESGHVGGAGLDVFVTEPPTGKLTKAKCALYDLVQVPDLVKHPKVIA 158

Query: 430 TPHLGASTKEAQVRVGQEIAEQLVN 504
            PHLGAST+EAQ RV QEIA+Q V+
Sbjct: 159 CPHLGASTEEAQRRVAQEIADQFVD 183



 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +3

Query: 63  VQCDSXRAKXIGFDPFVSADQCAQFHCTKMELEDXWPLADYITLHTPXIESTRNFINADV 242
           ++  S   K IG+DP VS    A+ +   ME E  WPLADYIT+H P I  T+  +N   
Sbjct: 25  LRMQSYGVKTIGYDPLVSPQDAAESNIEWMETEKIWPLADYITVHVPLIPPTKGMLNDKT 84

Query: 243 LKXCXKGVKIINVG*RRAYSRDXFLAGSEVWK-GGRG 350
           +  C KGV I+NV        +  L G E    GG G
Sbjct: 85  IGMCKKGVYILNVARGGIIDEEALLRGLESGHVGGAG 121


>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 32/75 (42%), Positives = 46/75 (61%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEPPTDPVTLEIIQQPAVIATPHLGASTKEAQ 465
           RGGL+   D   AL++G + GAALDV E EP   P    ++  P VI TPH+GA+T E  
Sbjct: 240 RGGLVNHDDLTTALQNGVIRGAALDVTEPEPL--PHGHPLLALPNVIVTPHVGATTFENG 297

Query: 466 VRVGQEIAEQLVNLV 510
           +R+  E  +++VN +
Sbjct: 298 LRITIEANKRVVNFL 312


>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEP-PTDPVTLEIIQQPAVIATPHLGASTKEA 462
           RGGL+   D   AL++G + GAALD  + EP P D   L +      I TPH+ ++T  A
Sbjct: 242 RGGLVNHDDLTTALQNGVIRGAALDATDPEPLPHDHPLLALSN---AIVTPHIASATLHA 298

Query: 463 Q 465
           +
Sbjct: 299 R 299


>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
          Length = 779

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEPPTDPVTLEIIQQPAVIATPHLGAS 450
           RGG++ + D   ALK+G++ GA LDV   EP   P+   ++     +  PH+G++
Sbjct: 196 RGGVVNQEDLYEALKNGEIRGAGLDVTVPEP--IPLDHPLLTLKNCVVLPHIGSA 248


>SB_20743| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 375

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 508 PGSRAAQQSP-GQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQPRP 341
           P   A  +SP GQ   ++P    P  E  +  A   SP+ Q +S  P  T P+Q  P
Sbjct: 291 PMDSAKARSPRGQHQSQIPTWTAPHQETPVDSARARSPRGQHQSQIPTWTAPQQETP 347



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 511 SPGSRAAQQSP-GQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQ 350
           +P   A  +SP GQ   ++P    P  E  +  A   SP+ Q +S  P  T PEQ
Sbjct: 318 TPVDSARARSPRGQHQSQIPTWTAPQQETPVDSARARSPRGQRQSKIPPWTAPEQ 372


>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
          Length = 307

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 496 AAQQSP-GQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQPRP 341
           A  ++P GQ   ++P    P  E  ++ A   SP+ Q +S  P  T P+Q  P
Sbjct: 124 ATSRNPRGQRQSKIPPWTAPQQETPVESARARSPRGQHQSQIPTWTAPQQDPP 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,239
Number of Sequences: 59808
Number of extensions: 263151
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)