Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N02
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    83   3e-16
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    28   9.7  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 47/92 (51%), Positives = 58/92 (63%)
 Frame = +1

Query: 286 RGGLIQETDFLXALKSGKVGGAALDVFEXEPPTDPVTLEIIQQPAVIATPHLGASTKEAQ 465
           RGG++ E D + +L +G   GAA DVFE EPPT     E+I  P VIATPHLGAST +AQ
Sbjct: 236 RGGIVNEVDLVESLNAGHAKGAAFDVFEQEPPT---FRELIDHPLVIATPHLGASTIDAQ 292

Query: 466 VRVGQEIAEQLVNLVKPGTFPTLLAEVTRVLN 561
           +RV  EIA+ +V   K GT   +L     VLN
Sbjct: 293 LRVASEIADNIVQYNK-GTMLGVL-NAREVLN 322



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 34/73 (46%), Positives = 44/73 (60%)
 Frame = +3

Query: 63  VQCDSXRAKXIGFDPFVSADQCAQFHCTKMELEDXWPLADYITLHTPXIESTRNFINADV 242
           V+  +   K IGFDP V+ +Q    +   + LE  WP ADYIT+H P I+ T N IN + 
Sbjct: 162 VRLQAFGMKVIGFDPMVTKEQAEAKNIELLSLEQIWPQADYITVHVPLIKQTENLINKET 221

Query: 243 LKXCXKGVKIINV 281
           L  C KGV+IINV
Sbjct: 222 LAKCKKGVRIINV 234


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +1

Query: 292 GLIQETDFLXALKSGKVGGAALDVFEXEPPTDPVTLE-IIQQPAVIATPHLG----ASTK 456
           GLI E D   ALK+G V GAALDV +     DP  L  ++  P +I TPH      AS K
Sbjct: 419 GLINENDLAAALKNGHVKGAALDVHD-SVRFDPNCLNPLVGCPNIINTPHSAWMTEASCK 477

Query: 457 EAQVRVGQEIAEQL 498
           + ++   +EI + +
Sbjct: 478 DLRINAAKEIRKAI 491



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 93  IGFDPFVSA--DQCAQFHCTKMELEDXWPLADYITLHTPXIESTRNFINADVLKXCXKGV 266
           I +DPFV    D+   F      +++    +D I+LH    + TR  INAD L+ C  GV
Sbjct: 352 IFYDPFVREGHDKALGFERV-YTMDEFMSRSDCISLHCNLGDETRGIINADSLRQCKSGV 410

Query: 267 KIIN 278
            I+N
Sbjct: 411 YIVN 414


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
 Frame = -1

Query: 538  PVESGMFPASPGSRAAQQSPGQLSPELP**RPPDV--EWQLQQAAE*SPK*QDRSAAPAR 365
            P+     P+ P      ++P  +    P   PP V  EW ++ + E  P  Q R     R
Sbjct: 1702 PITQSPVPSEP---VVVRTPSPVPQPTPPPPPPPVREEWVIRDSVERDPVTQGRIRGSFR 1758

Query: 364  TRP---EQPRPPFQTSEPA 317
              P   + PRPP    +PA
Sbjct: 1759 KEPLVPQPPRPPVVAEKPA 1777


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 186 CSPLEAKXPPAPSWCNGTG 130
           C+P  A  PP PS C+G+G
Sbjct: 35  CAPRPACPPPPPSGCSGSG 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,949
Number of Sequences: 27780
Number of extensions: 195910
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)