Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M24
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.7  
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     29   4.9  
08_02_0048 + 11606269-11606762,11623257-11623301,11623703-116237...    28   8.5  

>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 266  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 364
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 760 GLXAYYYYFHSPYRSXWXSGKXPSFQERRW 849
           G   YYYY    Y   W  GK   +    W
Sbjct: 165 GSGVYYYYMSGRYEGDWIDGKYDGYGVETW 194


>08_02_0048 +
           11606269-11606762,11623257-11623301,11623703-11623772,
           11623862-11623896,11624013-11624075,11624140-11624158
          Length = 241

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -1

Query: 632 VKATIHHLNVVHFICNFHVDKILR----ISFVW 546
           V  T++  +++ F+C FHVD ++     ISF W
Sbjct: 204 VMMTLNKASLIRFVCPFHVDLLIHDERAISFDW 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,495,290
Number of Sequences: 37544
Number of extensions: 341717
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)