Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M22
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    34   0.032
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.5  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 178 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEE 294
           N+D A   +    + GKMF+GGL+W+T+   S +D  E+
Sbjct: 148 NEDNAEETSPFNREDGKMFIGGLNWETT-DDSLRDYFEQ 185


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 79  ATPGAVPAAY-RSIVVVVP--TGSHRVPAPSPMETQNQDVARSPAEVPNDPG 225
           A P   P +Y  S     P  + S   PAP+P  +QN+    +P   P   G
Sbjct: 57  APPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG 108


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
 Frame = +1

Query: 97   PAAYRSIVVVVPTGSHRV---PAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPG 267
            PA   ++  V P     V   PAPS        V++ P  VPN P    +  ++ Q    
Sbjct: 1449 PAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSS 1508

Query: 268  KSSKDISEEQRKAARSLCGHVTEP 339
             +           ++S   HV  P
Sbjct: 1509 VAPATAPSSTLPPSQSSFAHVPSP 1532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,388
Number of Sequences: 5004
Number of extensions: 34042
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)