Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M22
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 33 0.32
10_08_0338 + 16916429-16916650,16916728-16917900 31 1.3
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199... 31 1.7
07_03_1061 + 23651404-23651625,23651764-23652954 30 3.0
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 30 3.0
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 29 3.9
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 29 5.2
07_01_0413 - 3155080-3155274,3155628-3155933,3156062-3156163,315... 29 5.2
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 5.2
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 28 9.0
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 33.1 bits (72), Expect = 0.32
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPG 267
G +P + VVVP S P P++ + + SP E K+ G L + PG
Sbjct: 406 GVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQAT-ACKIDKGALPQKEGPG 464
Query: 268 KSSKDISEEQRKA 306
SS +RKA
Sbjct: 465 TSSSSPLPVKRKA 477
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 31.1 bits (67), Expect = 1.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQTSPGK 270
+D GK+F+GG+SW+T+ K
Sbjct: 3 SDQGKLFIGGISWETTEEK 21
>01_01_0241 +
1992553-1993231,1993820-1993918,1994611-1994649,
1994806-1995857
Length = 622
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 229 MFVGGLSWQTSPGKSSKDISEEQRKAARSLCGHVT 333
+F+ L+W++ ++S D + E+ AA ++CG VT
Sbjct: 9 LFITYLAWESQAFRTSADANPEEGCAASTVCGKVT 43
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 217 DPGKMFVGGLSWQT 258
D GK+FVGG+SW+T
Sbjct: 4 DSGKLFVGGISWET 17
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 85 PGAVPAAYRSIVVVVPT--GSHRVPAPSPMETQNQDVARSPAEVPN 216
P +PAA ++ PT VPAP P TQ+ V +P+ N
Sbjct: 32 PKPLPAALLALAAAAPTLPALADVPAPPPSPTQDVQVLEAPSPAAN 77
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 29.5 bits (63), Expect = 3.9
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +1
Query: 103 AYRSIVVV----VPTGSHRVPAPSPMETQNQDVARSPAEVPNDPG---KMFVGGLSWQTS 261
AY IV V V GS V A + T NQ+ + S AE + PG ++F L+ S
Sbjct: 148 AYDHIVFVHYRDVQEGSISVSALNDSSTSNQNGSGSRAEAQSSPGLTSELFAPCLN-SCS 206
Query: 262 PGKSSKDISEEQRKAARSLCGHVTEPLW 345
PG S++++S Q A + V++P W
Sbjct: 207 PG-SAEEVS-SQIMAINNETNSVSQPDW 232
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 29.1 bits (62), Expect = 5.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTS 261
D GK+F+GG+SW T+
Sbjct: 4 DAGKLFIGGISWDTN 18
>07_01_0413 -
3155080-3155274,3155628-3155933,3156062-3156163,
3156262-3156705
Length = 348
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 193 RSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEEQR 300
RS + +PG++FVG L + + G+ S+ SE R
Sbjct: 108 RSRPALGQEPGRLFVGNLPYTMTSGEISQTFSEAGR 143
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 85 PGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSP 264
PG + A + V+++P+GS RV + S E Q AE+ + +G + + S
Sbjct: 260 PGDLVAHIKFTVLLLPSGSQRVTSHSLQELQPTKSIEDNAEI---KAWLALGTKTKKKSG 316
Query: 265 GKSSKDISEEQRKAARSLCG 324
K K E++R + CG
Sbjct: 317 AKKKK--GEQERSPTSAWCG 334
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 184 DVARSPAEVPNDPGKMFVGGLSWQTSPGKSSK 279
D R+P + GK+FVGG++W+T+ SK
Sbjct: 55 DDGRAPGG--DSSGKIFVGGVAWETTEESFSK 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,104
Number of Sequences: 37544
Number of extensions: 270069
Number of successful extensions: 1131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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