Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M22
         (918 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            29   4.0  
SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)                       29   4.0  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   5.3  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_51973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 29   5.3  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 28   9.2  

>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 69   VQPSDSGSRPRRVSLDRSRSADRLAPRAGPEPHGDP 176
            V PS    +P+R    R++S D L P+A P P   P
Sbjct: 2798 VAPSPKPEKPQRKPRARAKSKDSLTPQASPLPGQGP 2833


>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 236 TNIFPGSLGTSAGLRATSWFWVSMG 162
           TN+ PG++ +  G+R  S FWV +G
Sbjct: 340 TNVPPGAITSINGMRVLSMFWVILG 364


>SB_9781| Best HMM Match : MarC (HMM E-Value=8.8)
          Length = 430

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 236 TNIFPGSLGTSAGLRATSWFWVSMG 162
           TN+ PG++ +  G+R  S FWV +G
Sbjct: 326 TNVPPGAITSINGMRVLSMFWVILG 350


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 72  QPSDSGSRPRRVSLDRSRSADRLAPR 149
           +P D  +RPRR SL  S++ D+ A R
Sbjct: 340 KPQDQAARPRRASLKTSKAQDKHAAR 365


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 136 GSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEEQRKA 306
           G++      PME +    A S + + N P K+    L     PGK + ++ +E   A
Sbjct: 214 GNNDTNPEEPMEAETNGAASSCSSLENAPAKVKTEVLDTSQDPGKIADEVIDELMSA 270


>SB_51973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +2

Query: 218 TRGRCSSEDSAGRLVQVNRRKTSLRSKG---KQRGLF 319
           T  R  +EDS+ +LVQ+ R + S+R  G   KQR LF
Sbjct: 20  TNLRPMAEDSSKKLVQIRRMEYSIRKNGIGKKQRFLF 56


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 258 SLPAESSDEHLPRVVRHLCGASGHILVL 175
           ++P   SDE   R++R++CG   HI ++
Sbjct: 42  TVPLSYSDEDKERIIRYICGNEEHIALI 69


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +1

Query: 73  SRATPGAVPAAYRSIVVVV----PTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVG 240
           S+ TP A   ++ S VVV+    P G     APSP + +   V  +P + P+   K    
Sbjct: 249 SQPTPSA---SHDSDVVVIADNAPAGGLVTAAPSPPDKKQSSVCHTPPKTPS--SKTTPA 303

Query: 241 GLSWQTSPGKSSKDISEEQRK 303
               +TSP  +S   ++  R+
Sbjct: 304 DAETKTSPSTTSPQTNKALRQ 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,308
Number of Sequences: 59808
Number of extensions: 285499
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)