Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M22
(918 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2 (Dros... 42 0.002
AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein. 39 0.029
AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein. 39 0.029
D89092-1|BAA24361.1| 301|Homo sapiens hnRNP JKTBP protein. 35 0.48
CR407623-1|CAG28551.1| 420|Homo sapiens HNRPDL protein. 35 0.48
BC071944-1|AAH71944.1| 420|Homo sapiens heterogeneous nuclear r... 35 0.48
BC011714-1|AAH11714.1| 420|Homo sapiens heterogeneous nuclear r... 35 0.48
BC007392-1|AAH07392.2| 415|Homo sapiens HNRPDL protein protein. 35 0.48
AY453824-1|AAR17782.1| 298|Homo sapiens CArG binding factor pro... 35 0.48
AC124016-2|AAY40914.1| 420|Homo sapiens unknown protein. 35 0.48
AB066484-1|BAB62188.1| 244|Homo sapiens JKTBP1delta6 protein. 35 0.48
AB017019-1|BAA75241.1| 420|Homo sapiens JKTBP2 protein. 35 0.48
AB017018-2|BAA75240.1| 301|Homo sapiens JKTBP1 protein. 35 0.48
AB017018-1|BAA75239.1| 420|Homo sapiens JKTBP2 protein. 35 0.48
U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein. 34 0.83
U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein. 33 1.1
M65028-1|AAA36575.1| 284|Homo sapiens hnRNP type A/B protein pr... 33 1.1
BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear r... 33 1.1
BC009359-1|AAH09359.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.1
BC004561-1|AAH04561.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.1
BC002625-1|AAH02625.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.1
BC001616-1|AAH01616.1| 285|Homo sapiens heterogeneous nuclear r... 33 1.1
AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear r... 33 1.1
AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens ... 33 1.1
BC105058-1|AAI05059.1| 312|Homo sapiens likely ortholog of MEF2... 33 1.9
BC105056-1|AAI05057.1| 312|Homo sapiens likely ortholog of MEF2... 33 1.9
AK131427-1|BAD18574.1| 415|Homo sapiens protein ( Homo sapiens ... 33 1.9
AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens ... 33 1.9
AK093389-1|BAC04152.1| 312|Homo sapiens protein ( Homo sapiens ... 33 1.9
AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear r... 33 1.9
D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear rib... 32 3.4
BC109258-1|AAI09259.1| 560|Homo sapiens ATH1, acid trehalase-li... 32 3.4
BC109257-1|AAI09258.1| 560|Homo sapiens ATH1, acid trehalase-li... 32 3.4
AK090428-1|BAC03409.1| 339|Homo sapiens FLJ00345 protein protein. 32 3.4
M61199-1|AAB00773.1| 249|Homo sapiens cleavage signal 1 protein... 31 5.9
BC017282-1|AAH17282.1| 860|Homo sapiens THRAP5 protein protein. 31 5.9
BC011841-1|AAH11841.1| 841|Homo sapiens THRAP5 protein protein. 31 5.9
BC007853-1|AAH07853.2| 504|Homo sapiens THRAP5 protein protein. 31 5.9
BC004554-1|AAH04554.1| 841|Homo sapiens THRAP5 protein protein. 31 5.9
AF121228-1|AAD30032.1| 877|Homo sapiens thyroid hormone recepto... 31 5.9
AF106934-1|AAD31087.1| 873|Homo sapiens vitamin D receptor-inte... 31 5.9
AY603755-1|AAT80901.1| 3094|Homo sapiens striated muscle prefere... 31 7.7
AB037718-1|BAA92535.1| 2242|Homo sapiens KIAA1297 protein protein. 31 7.7
>BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2
(Drosophila) protein.
Length = 328
Score = 42.3 bits (95), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 178 NQDVARSPAEVPNDPGKMFVGGLSWQTSP 264
+Q + S + +DPGKMF+GGLSWQTSP
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSP 34
>AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein.
Length = 362
Score = 38.7 bits (86), Expect = 0.029
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 166 METQNQDVARSPAEVPNDPGKMFVGGLSWQTS 261
MET + + P+DP KMF+GGLSWQT+
Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTT 32
>AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein.
Length = 362
Score = 38.7 bits (86), Expect = 0.029
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 166 METQNQDVARSPAEVPNDPGKMFVGGLSWQTS 261
MET + + P+DP KMF+GGLSWQT+
Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTT 32
>D89092-1|BAA24361.1| 301|Homo sapiens hnRNP JKTBP protein.
Length = 301
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 27 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 67
>CR407623-1|CAG28551.1| 420|Homo sapiens HNRPDL protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 146 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 186
>BC071944-1|AAH71944.1| 420|Homo sapiens heterogeneous nuclear
ribonucleoprotein D-like protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 146 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 186
>BC011714-1|AAH11714.1| 420|Homo sapiens heterogeneous nuclear
ribonucleoprotein D-like protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 146 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 186
>BC007392-1|AAH07392.2| 415|Homo sapiens HNRPDL protein protein.
Length = 415
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 141 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 181
>AY453824-1|AAR17782.1| 298|Homo sapiens CArG binding factor
protein.
Length = 298
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 24 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 64
>AC124016-2|AAY40914.1| 420|Homo sapiens unknown protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 146 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 186
>AB066484-1|BAB62188.1| 244|Homo sapiens JKTBP1delta6 protein.
Length = 244
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 27 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 67
>AB017019-1|BAA75241.1| 420|Homo sapiens JKTBP2 protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 146 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 186
>AB017018-2|BAA75240.1| 301|Homo sapiens JKTBP1 protein.
Length = 301
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 27 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 67
>AB017018-1|BAA75239.1| 420|Homo sapiens JKTBP2 protein.
Length = 420
Score = 34.7 bits (76), Expect = 0.48
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKDISEEQRKAARSL-CGHVTEPLWG 348
D GKMF+GGLSW T S KD++E + + C T+P+ G
Sbjct: 146 DDGKMFIGGLSWDT----SKKDLTEYLSRFGEVVDCTIKTDPVTG 186
>U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein.
Length = 286
Score = 33.9 bits (74), Expect = 0.83
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 130 PTGSHRVPAPS-PMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKD 282
P R+ AP E++ + S E D GKMF+GGLSW T+ K KD
Sbjct: 46 PGAEPRLEAPKGSAESEGAKIDASKNE--EDEGKMFIGGLSWDTTK-KDLKD 94
>U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein.
Length = 331
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 66 DAGKMFVGGLSWDTSK-KDLKD 86
>M65028-1|AAA36575.1| 284|Homo sapiens hnRNP type A/B protein
protein.
Length = 284
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 66 DAGKMFVGGLSWDTSK-KDLKD 86
>BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 332
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>BC009359-1|AAH09359.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>BC004561-1|AAH04561.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>BC002625-1|AAH02625.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>BC001616-1|AAH01616.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein AB isoform a variant protein.
Length = 332
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens
cDNA FLJ40338 fis, clone TESTI2032067, highly similar to
Rattus norvegicus mRNA for type A/B hnRNP protein p40.
).
Length = 332
Score = 33.5 bits (73), Expect = 1.1
Identities = 16/22 (72%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMFVGGLSW TS K KD
Sbjct: 68 DAGKMFVGGLSWDTSK-KDLKD 88
>BC105058-1|AAI05059.1| 312|Homo sapiens likely ortholog of
MEF2-activating SAP transcriptional regulator protein.
Length = 312
Score = 32.7 bits (71), Expect = 1.9
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +1
Query: 76 RATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 255
R P A+ AA R V SHR P P +T +PA P P L+
Sbjct: 124 RLKPKALAAARRQGSVKPSAASHRPPLPRAADTP----GTAPAPTPT-PAPAAAPALTPS 178
Query: 256 TSPGKSSKDISEEQRKAAR 312
+ PG ++ + EE ++A R
Sbjct: 179 SGPGSAALTLEEELQEAIR 197
>BC105056-1|AAI05057.1| 312|Homo sapiens likely ortholog of
MEF2-activating SAP transcriptional regulator protein.
Length = 312
Score = 32.7 bits (71), Expect = 1.9
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +1
Query: 76 RATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 255
R P A+ AA R V SHR P P +T +PA P P L+
Sbjct: 124 RLKPKALAAARRQGSVKPSAASHRPPLPRAADTP----GTAPAPTPT-PAPAAAPALTPS 178
Query: 256 TSPGKSSKDISEEQRKAAR 312
+ PG ++ + EE ++A R
Sbjct: 179 SGPGSAALTLEEELQEAIR 197
>AK131427-1|BAD18574.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ16552 fis, clone SKMUS2003194. ).
Length = 415
Score = 32.7 bits (71), Expect = 1.9
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +1
Query: 76 RATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 255
R P A+ AA R V SHR P P +T +PA P P L+
Sbjct: 227 RLKPKALAAARRQGSVKPSAASHRPPLPRAADTP----GTAPAPTPT-PAPAAAPALTPS 281
Query: 256 TSPGKSSKDISEEQRKAAR 312
+ PG ++ + EE ++A R
Sbjct: 282 SGPGSAALTLEEELQEAIR 300
>AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ36569 fis, clone TRACH2010824, highly similar to
Ribonucleoprotein. ).
Length = 251
Score = 32.7 bits (71), Expect = 1.9
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 226 KMFVGGLSWQTSP 264
KMF+GGLSWQTSP
Sbjct: 18 KMFIGGLSWQTSP 30
>AK093389-1|BAC04152.1| 312|Homo sapiens protein ( Homo sapiens
cDNA FLJ36070 fis, clone TESTI2019488, weakly similar to
PERIOD CIRCADIAN PROTEIN 1. ).
Length = 312
Score = 32.7 bits (71), Expect = 1.9
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +1
Query: 76 RATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQ 255
R P A+ AA R V SHR P P +T +PA P P L+
Sbjct: 124 RLKPKALAAARRQGSVKPSAASHRPPLPRAADTP----GTAPAPTPT-PAPAAAPALTPS 178
Query: 256 TSPGKSSKDISEEQRKAAR 312
+ PG ++ + EE ++A R
Sbjct: 179 SGPGSAALTLEEELQEAIR 197
>AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.9
Identities = 26/68 (38%), Positives = 31/68 (45%)
Frame = +1
Query: 79 ATPGAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQT 258
AT GA AA T S S E++ + S E D GKMF+GGLSW T
Sbjct: 33 ATQGAAAAAGSGAGTGGGTASGGTEGGSA-ESEGAKIDASKNE--EDEGKMFIGGLSWDT 89
Query: 259 SPGKSSKD 282
+ K KD
Sbjct: 90 TK-KDLKD 96
>D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 267
Score = 31.9 bits (69), Expect = 3.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTSPGKSSKD 282
D GKMF+GGLSW T+ K KD
Sbjct: 7 DEGKMFIGGLSWDTTK-KDLKD 27
>BC109258-1|AAI09259.1| 560|Homo sapiens ATH1, acid trehalase-like
1 (yeast) protein.
Length = 560
Score = 31.9 bits (69), Expect = 3.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = -2
Query: 347 PHSGSVTWPQRDRAAFLCSSEMSFDDLPGLVCQLSPP------TNIFPGSLGTSAGLRAT 186
PH + WP + R + L ++SF G + Q+SPP ++ FPG +
Sbjct: 479 PHLEAELWPSQSRLSLLPGHKVSFPRSAGRI-QMSPPKLPGSSSSEFPGRTFSDVRDPLQ 537
Query: 185 SWFWVSMGLGAGT 147
S WV++G + T
Sbjct: 538 SPLWVTLGSSSPT 550
>BC109257-1|AAI09258.1| 560|Homo sapiens ATH1, acid trehalase-like
1 (yeast) protein.
Length = 560
Score = 31.9 bits (69), Expect = 3.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = -2
Query: 347 PHSGSVTWPQRDRAAFLCSSEMSFDDLPGLVCQLSPP------TNIFPGSLGTSAGLRAT 186
PH + WP + R + L ++SF G + Q+SPP ++ FPG +
Sbjct: 479 PHLEAELWPSQSRLSLLPGHKVSFPRSAGRI-QMSPPKLPGSSSSEFPGRTFSDVRDPLQ 537
Query: 185 SWFWVSMGLGAGT 147
S WV++G + T
Sbjct: 538 SPLWVTLGSSSPT 550
>AK090428-1|BAC03409.1| 339|Homo sapiens FLJ00345 protein protein.
Length = 339
Score = 31.9 bits (69), Expect = 3.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = -2
Query: 347 PHSGSVTWPQRDRAAFLCSSEMSFDDLPGLVCQLSPP------TNIFPGSLGTSAGLRAT 186
PH + WP + R + L ++SF G + Q+SPP ++ FPG +
Sbjct: 258 PHLEAELWPSQSRLSLLPGHKVSFPRSAGRI-QMSPPKLPGSSSSEFPGRTFSDVRDPLQ 316
Query: 185 SWFWVSMGLGAGT 147
S WV++G + T
Sbjct: 317 SPLWVTLGSSSPT 329
>M61199-1|AAB00773.1| 249|Homo sapiens cleavage signal 1 protein
protein.
Length = 249
Score = 31.1 bits (67), Expect = 5.9
Identities = 18/81 (22%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +1
Query: 94 VPAAYRSIVVVVPTGSH---RVPAPSPMETQNQ--DVARSPAEVPNDPGKMFVGGLSWQT 258
+P+ +RS ++ GS + PSP+ ++ + + + ++ G + +G + ++
Sbjct: 26 MPSPFRSSALMGMCGSRSTDNLSCPSPLNVMEPVTELMQEQSYLKSELG-LGLGEMGFEI 84
Query: 259 SPGKSSKDISEEQRKAARSLC 321
PG+SS+ + +QR + S+C
Sbjct: 85 PPGESSESVFSKQRSESSSIC 105
>BC017282-1|AAH17282.1| 860|Homo sapiens THRAP5 protein protein.
Length = 860
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 354 TSTPQRLSNVAAKRPRCFPLLLRDVFRRFTWTSLPAESSDEHLPRVVRHLCGASGHILVL 175
++ P+ + A KRPR + + +WTSL D H V L + GH L +
Sbjct: 408 SAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEV 467
Query: 174 GL 169
GL
Sbjct: 468 GL 469
>BC011841-1|AAH11841.1| 841|Homo sapiens THRAP5 protein protein.
Length = 841
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 354 TSTPQRLSNVAAKRPRCFPLLLRDVFRRFTWTSLPAESSDEHLPRVVRHLCGASGHILVL 175
++ P+ + A KRPR + + +WTSL D H V L + GH L +
Sbjct: 408 SAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEV 467
Query: 174 GL 169
GL
Sbjct: 468 GL 469
>BC007853-1|AAH07853.2| 504|Homo sapiens THRAP5 protein protein.
Length = 504
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 354 TSTPQRLSNVAAKRPRCFPLLLRDVFRRFTWTSLPAESSDEHLPRVVRHLCGASGHILVL 175
++ P+ + A KRPR + + +WTSL D H V L + GH L +
Sbjct: 161 SAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEV 220
Query: 174 GL 169
GL
Sbjct: 221 GL 222
>BC004554-1|AAH04554.1| 841|Homo sapiens THRAP5 protein protein.
Length = 841
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 354 TSTPQRLSNVAAKRPRCFPLLLRDVFRRFTWTSLPAESSDEHLPRVVRHLCGASGHILVL 175
++ P+ + A KRPR + + +WTSL D H V L + GH L +
Sbjct: 408 SAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEV 467
Query: 174 GL 169
GL
Sbjct: 468 GL 469
>AF121228-1|AAD30032.1| 877|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP95
protein.
Length = 877
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 354 TSTPQRLSNVAAKRPRCFPLLLRDVFRRFTWTSLPAESSDEHLPRVVRHLCGASGHILVL 175
++ P+ + A KRPR + + +WTSL D H V L + GH L +
Sbjct: 408 SAAPKPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEV 467
Query: 174 GL 169
GL
Sbjct: 468 GL 469
>AF106934-1|AAD31087.1| 873|Homo sapiens vitamin D
receptor-interacting protein protein.
Length = 873
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 354 TSTPQRLSNVAAKRPRCFPLLLRDVFRRFTWTSLPAESSDEHLPRVVRHLCGASGHILVL 175
++ P+ + A KRPR + + +WTSL D H V L + GH L +
Sbjct: 408 SAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEV 467
Query: 174 GL 169
GL
Sbjct: 468 GL 469
>AY603755-1|AAT80901.1| 3094|Homo sapiens striated muscle
preferentially expressed protein protein.
Length = 3094
Score = 30.7 bits (66), Expect = 7.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 72 QPSDSGSRPRRVSLDRSRSADRLAPRAGPEPHG 170
Q +G+ PRR L R SA+ PRAGP G
Sbjct: 1868 QEPAAGASPRRGELRRGSSAESALPRAGPRELG 1900
>AB037718-1|BAA92535.1| 2242|Homo sapiens KIAA1297 protein protein.
Length = 2242
Score = 30.7 bits (66), Expect = 7.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 72 QPSDSGSRPRRVSLDRSRSADRLAPRAGPEPHG 170
Q +G+ PRR L R SA+ PRAGP G
Sbjct: 1016 QEPAAGASPRRGELRRGSSAESALPRAGPRELG 1048
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,474,246
Number of Sequences: 237096
Number of extensions: 1529780
Number of successful extensions: 9482
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 9155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9465
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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