Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M22
(918 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 36 0.031
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 36 0.031
Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 31 0.87
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 29 6.2
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 29 6.2
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 29 6.2
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 29 6.2
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 29 6.2
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 29 6.2
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 29 6.2
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.3 bits (80), Expect = 0.031
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTS 261
DPGKMF+GGLSWQT+
Sbjct: 43 DPGKMFIGGLSWQTT 57
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.3 bits (80), Expect = 0.031
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 217 DPGKMFVGGLSWQTS 261
DPGKMF+GGLSWQT+
Sbjct: 43 DPGKMFIGGLSWQTT 57
>Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical
protein F36A2.9b protein.
Length = 565
Score = 31.5 bits (68), Expect = 0.87
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = -2
Query: 413 EKSRRSHFHFVSVW*ILSEKHQPHSGSVTWPQRDRAAFLCSSEMSFDDLPGL-VCQLSPP 237
E+ H H S+ I EKHQP +G + DR F C + + L G V +SP
Sbjct: 91 ERDSVDHQHLKSLTAIKPEKHQPVAGVINSAFNDRKTFSC-PRIKTELLTGTNVGNISPE 149
Query: 236 TNIFPGSLGTSAGLRATSWFWVSMGLGAGTRCEPVGTTTTIERYAAGTAPGVAR 75
++G + L W + + P+G +TI+ T P + R
Sbjct: 150 DITIIAAMGDA--LATGIGLWPNADIEFRGASFPIGGDSTIDGLI--TIPNILR 199
>Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical
protein F36A2.9a protein.
Length = 528
Score = 31.5 bits (68), Expect = 0.87
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = -2
Query: 413 EKSRRSHFHFVSVW*ILSEKHQPHSGSVTWPQRDRAAFLCSSEMSFDDLPGL-VCQLSPP 237
E+ H H S+ I EKHQP +G + DR F C + + L G V +SP
Sbjct: 91 ERDSVDHQHLKSLTAIKPEKHQPVAGVINSAFNDRKTFSC-PRIKTELLTGTNVGNISPE 149
Query: 236 TNIFPGSLGTSAGLRATSWFWVSMGLGAGTRCEPVGTTTTIERYAAGTAPGVAR 75
++G + L W + + P+G +TI+ T P + R
Sbjct: 150 DITIIAAMGDA--LATGIGLWPNADIEFRGASFPIGGDSTIDGLI--TIPNILR 199
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.87
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 154 APSPMETQNQD--VARSPAEVPN-DPGKMFVGGLSWQTSPGKSSKDISEEQR-KAARSL 318
AP PME Q+Q+ + +SPA P+ D V L+ +S+K +EQ+ KAA S+
Sbjct: 164 APVPMEIQSQEQPIKKSPAPTPSLDASNKPVAALASTPQQKESTKKTEKEQKEKAAPSV 222
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 94 VPAAY---RSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSP 264
+P AY VV P S+R P+P+P + + R P E +P S SP
Sbjct: 1591 IPRAYPYQNGNVVPPPPSSYRAPSPAPTSGDRRGLNRLPQESYTEPAVKNTKNNSEYLSP 1650
Query: 265 GKSSKD 282
+ + D
Sbjct: 1651 HRFNLD 1656
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 508 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 550
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 534 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 576
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 508 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 550
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 534 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 576
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 375 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 417
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 508 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 550
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 88 GAVPAAYRSIVVVVPTGSHRVPAPSPMETQNQDVARSPAEVPND 219
G VP + + ++P+ H P P PM+ Q R P++ P D
Sbjct: 534 GRVPP-HVEMTSLLPSAQHLGPPPYPMDQHLQQARRFPSQEPID 576
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,032,909
Number of Sequences: 27780
Number of extensions: 213487
Number of successful extensions: 642
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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