Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_M22
(918 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 31 0.81
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 31 1.1
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 29 4.3
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 4.3
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 4.3
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 4.3
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 29 4.3
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 7.5
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 7.5
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 7.5
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 28 10.0
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 28 10.0
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 28 10.0
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 28 10.0
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.5 bits (68), Expect = 0.81
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQTSPGK 270
+D GK+FVGG+SW+T K
Sbjct: 3 SDQGKLFVGGISWETDEDK 21
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQTS 261
+ PGK+FVGG+SW+T+
Sbjct: 63 SSPGKLFVGGVSWETT 78
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +1
Query: 130 PTGSHRVPAPSPMETQNQDVARSPAEVPNDPGKMFVGGLSWQTSPGKSSKDISEEQRKAA 309
P+G+ AP+P TQ Q VA P + G + +P ++ ++ +AA
Sbjct: 80 PSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAA 139
Query: 310 RSLCGHVT 333
+L T
Sbjct: 140 SNLVAGTT 147
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 205 EVPNDPGKMFVGGLSWQT 258
E +D GK+F+GG+SW T
Sbjct: 9 ESASDLGKLFIGGISWDT 26
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQTS 261
+D GK+F+GG+SW T+
Sbjct: 3 SDNGKLFIGGISWDTN 18
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQTS 261
+D GK+F+GG+SW T+
Sbjct: 3 SDNGKLFIGGISWDTN 18
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQT 258
+D GK+F+GG+SW T
Sbjct: 3 SDQGKLFIGGISWDT 17
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQT 258
+D GK+F+GG+SW T
Sbjct: 3 SDLGKLFIGGISWDT 17
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQT 258
+D GK+F+GG+SW T
Sbjct: 3 SDLGKLFIGGISWDT 17
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 214 NDPGKMFVGGLSWQT 258
+D GK+F+GG+SW T
Sbjct: 3 SDLGKLFIGGISWDT 17
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 75 PSDSGSRPRRVSLDRSRSADRLAPRAGPEPHGD 173
P D PR DR R DR RAGP G+
Sbjct: 106 PGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGE 138
>At5g22770.3 68418.m02661 adaptin family protein similar to SP|P18484
adaptor-related protein complex 2 alpha 2 subunit
(Alpha-adaptin C) (Clathrin assembly protein complex 2
alpha-C large chain) {Rattus norvegicus}; contains Pfam
profiles PF01602 Adaptin N terminal region, PF02883
Adaptin C-terminal domain
Length = 1012
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 118 VVVVPTGSHR-VPAPSPMETQNQDVARSPAEVPNDPGKMFVG 240
++ VP GS VPA P Q SPA + +DPG M G
Sbjct: 971 LITVPMGSRALVPAAGPAPPVAQPP--SPAALADDPGAMLAG 1010
>At5g22770.2 68418.m02660 adaptin family protein similar to SP|P18484
adaptor-related protein complex 2 alpha 2 subunit
(Alpha-adaptin C) (Clathrin assembly protein complex 2
alpha-C large chain) {Rattus norvegicus}; contains Pfam
profiles PF01602 Adaptin N terminal region, PF02883
Adaptin C-terminal domain
Length = 1012
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 118 VVVVPTGSHR-VPAPSPMETQNQDVARSPAEVPNDPGKMFVG 240
++ VP GS VPA P Q SPA + +DPG M G
Sbjct: 971 LITVPMGSRALVPAAGPAPPVAQPP--SPAALADDPGAMLAG 1010
>At5g22770.1 68418.m02659 adaptin family protein similar to SP|P18484
adaptor-related protein complex 2 alpha 2 subunit
(Alpha-adaptin C) (Clathrin assembly protein complex 2
alpha-C large chain) {Rattus norvegicus}; contains Pfam
profiles PF01602 Adaptin N terminal region, PF02883
Adaptin C-terminal domain
Length = 1012
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 118 VVVVPTGSHR-VPAPSPMETQNQDVARSPAEVPNDPGKMFVG 240
++ VP GS VPA P Q SPA + +DPG M G
Sbjct: 971 LITVPMGSRALVPAAGPAPPVAQPP--SPAALADDPGAMLAG 1010
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,319
Number of Sequences: 28952
Number of extensions: 193013
Number of successful extensions: 637
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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