Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M21
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    28   1.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.5  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.6  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 111 TPKIIETVQPTSLQPVLD 58
           +PK++ETVQ T +QP +D
Sbjct: 246 SPKLLETVQSTIIQPTID 263


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 253 NDCFTDEECLLSVNSLRQHHMRLAGFKDLGYSFV 354
           N  FTDE+  + V  LRQ ++ L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 244 RVSNDCFTDEECLLSVNSLRQHHMRLA--GFKDLGYSF 351
           R++ DC      L+S+  L Q+H +L+   F D  Y+F
Sbjct: 558 RINEDCILAARHLISLVHLLQNHSQLSCYSFFDYNYTF 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,593
Number of Sequences: 5004
Number of extensions: 60953
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)