Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M21
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC084153-4|AAK84598.2|  836|Caenorhabditis elegans Hypothetical ...    29   5.4  

>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
 Frame = +1

Query: 253 NDCFTDEECLLS-VNSLRQHHMR-------LAGFKDLGYSFVAGGXGKIYE----GAGWN 396
           ++CF D ECLL+  NS   H+          A +KD+ YS V    G IY      AGW+
Sbjct: 48  DECFEDSECLLAFFNSACFHYYTELPDATCPASYKDIKYS-VTSDSGDIYSWKKTDAGWS 106

Query: 397 H 399
           +
Sbjct: 107 Y 107


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 196 RRDSVPLHSVMGISPHWDAAFRVPKLTKNTKNNRDGATN 80
           R DS+P+  V+GISP   A F       N  ++ D + N
Sbjct: 244 RNDSIPIEPVVGISPVLVANFNRTSPDSNNTHHHDESRN 282


>AC084153-4|AAK84598.2|  836|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.9 protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 178 VARSHVVNNL*RVLLTWW*YNTRVSNDCFTDEECLLSVNSLRQHHMRLAGFKDLGYSFV 354
           +AR+ +  N   + L+    +  ++ DC  +E+  +S   + + + ++ GF D+   FV
Sbjct: 658 LARAELERNNTEIALSAVEKSINLAEDCENNEKLAISCRLIAEIYQKIGGFNDISIQFV 716


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,716
Number of Sequences: 27780
Number of extensions: 342806
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)