Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M21
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    29   3.8  
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ...    29   3.8  
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ...    29   3.8  
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ...    29   3.8  
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ...    29   3.8  
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ...    29   3.8  
At2g24370.1 68415.m02912 protein kinase family protein contains ...    28   6.7  
At5g52100.1 68418.m06467 dihydrodipicolinate reductase family pr...    28   8.9  
At3g04560.1 68416.m00484 expressed protein                             28   8.9  

>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 530 FSTPHAKKSWTACSACWVGSFSXKSPMKPIPMDIL 426
           FS  H++   T C  CW GS   K  M  +P+  L
Sbjct: 444 FSMGHSRFPKTDCPLCWPGSRRSKCRMTELPLAFL 478


>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 785

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 267 CKAIVGHPCVVSPPSQ*DSSEVVYDVTPCHSIR*WE 160
           C  + GH CV+S  +Q  S+ VV   +   S++ W+
Sbjct: 750 CMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 785


>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 267 CKAIVGHPCVVSPPSQ*DSSEVVYDVTPCHSIR*WE 160
           C  + GH CV+S  +Q  S+ VV   +   S++ W+
Sbjct: 752 CMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787


>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 267 CKAIVGHPCVVSPPSQ*DSSEVVYDVTPCHSIR*WE 160
           C  + GH CV+S  +Q  S+ VV   +   S++ W+
Sbjct: 752 CMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787


>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 267 CKAIVGHPCVVSPPSQ*DSSEVVYDVTPCHSIR*WE 160
           C  + GH CV+S  +Q  S+ VV   +   S++ W+
Sbjct: 752 CMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787


>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
           WD-40 repeats ; similar to LEUNIG
           (GP:11141605)[Arabidopsis thaliana]
          Length = 787

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 267 CKAIVGHPCVVSPPSQ*DSSEVVYDVTPCHSIR*WE 160
           C  + GH CV+S  +Q  S+ VV   +   S++ W+
Sbjct: 752 CMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787


>At2g24370.1 68415.m02912 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 816

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 153 RIGTLHSGFRNSPRTPKIIETVQPTSLQP 67
           +I T+ S  R++P T  +  +VQP SL+P
Sbjct: 172 KIQTMRSASRSAPMTAPLRSSVQPPSLKP 200


>At5g52100.1 68418.m06467 dihydrodipicolinate reductase family
           protein weak similarity to dihydrodipicolinate reductase
           [Corynebacterium glutamicum] GI:311768; contains Pfam
           profiles PF01113: Dihydrodipicolinate reductase
           N-terminus, PF05173: Dihydrodipicolinate reductase
           C-terminus
          Length = 298

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 142 RPNAAKFPSPNGVARSHVVNNL*RVLLTWW*YNTRVSNDCFTDEECLLSVNSLRQHHMRL 321
           RPNAA  PSP  +  ++ ++NL ++      YN   S+        ++  + +R H M L
Sbjct: 190 RPNAADLPSPEAIQIANNISNLGQI------YNREDSSTDVQARGQVIGEDGVRVHSMVL 243

Query: 322 AG 327
            G
Sbjct: 244 PG 245


>At3g04560.1 68416.m00484 expressed protein
          Length = 417

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 217 LLTWW*YNTRVSNDCFTDEECLLSVNSLR 303
           LLT W +   V+ND FTD+  + S  + R
Sbjct: 189 LLTIWTFKAVVANDLFTDDSFMFSKTATR 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,141
Number of Sequences: 28952
Number of extensions: 321055
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)