Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_M20
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    43   5e-05
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   3.4  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   6.0  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
 Frame = +3

Query: 195 ELKRPNFVLILTDD---QDVVLGGMDPMT-NVQRFIGKEGITFTNSYVTSPICCPSRASL 362
           E K+PNF++I+ DD    DV   G +  T N++R + KEG+  TN + T+  C P+R+ L
Sbjct: 8   ESKKPNFLVIVADDLGWSDVSPFGSEIHTPNIER-LAKEGVRLTN-FHTASACSPTRSML 65

Query: 363 LTGMYVH 383
           L+G   H
Sbjct: 66  LSGTDNH 72


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 640 SAHRCWTKYSCSKLNSRPDRAILSSPGVPPXGHQP 536
           S  RC T  S S++NS       SSP  PP    P
Sbjct: 2   SLSRCPTDNSSSRINSSVPLINSSSPATPPESFDP 36


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 556 VPPGWTEWRGLVGNSVYYNYTLSNN 630
           +PPGWTE +   G   Y+N  L  +
Sbjct: 5   LPPGWTEHKAPSGIPYYWNAELKKS 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,106
Number of Sequences: 5004
Number of extensions: 54841
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)